Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1500(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1500
|Gene||Common Name||Description||Module membership|
|CAC0135||CAC0135||Hypothetical protein, CF-23 family (NCBI ptt file)||13, 247|
|CAC0248||CAC0248||Transposon related protein (NCBI ptt file)||13, 117|
|CAC0325||CAC0325||Uncharacterized membrane protein, homolog of YtaF B.subtilis (NCBI ptt file)||13, 117|
|CAC0349||CAC0349||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC0419||CAC0419||Predicted membrane protein (NCBI ptt file)||247, 351|
|CAC0450||CAC0450||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||13, 66|
|CAC0451||CAC0451||Sensory transduction histidine kinase (HAMP, HisKA, HATPase domains) (NCBI ptt file)||13, 140|
|CAC0589||birA||Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)||13, 140|
|CAC0698||CAC0698||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||217, 351|
|CAC0778||CAC0778||ATP-dependent RNA helicase, superfamily II (NCBI ptt file)||13, 66|
|CAC0820||CAC0820||Conserved protein, ortholog YwqG B.subtilis (NCBI ptt file)||13, 66|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1060||CAC1060||Predicted membrane protein (NCBI ptt file)||336, 351|
|CAC1064||CAC1064||TPR-repeat-containing protein (NCBI ptt file)||49, 351|
|CAC1163||CAC1163||Hypothetical protein (NCBI ptt file)||16, 351|
|CAC1167||CAC1167||Hypothetical protein (NCBI ptt file)||246, 351|
|CAC1213||CAC1213||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC1371||CAC1371||Possible kinase, diverged (NCBI ptt file)||13, 55|
|CAC1381||cbiJ/cobK||precorrin-6x reductase (NCBI ptt file)||13, 55|
|CAC1409||CAC1409||Predicted membrane protein (NCBI ptt file)||78, 351|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1848||cmk||Cytidylate kinase (NCBI ptt file)||35, 351|
|CAC1972||CAC1972||Predicted membrane protein (NCBI ptt file)||191, 351|
|CAC2188||CAC2188||Protein containing a domain related to multimeric flavodoxin WrbA family (NCBI ptt file)||351, 355|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2322||CAC2322||Hypothetical protein (NCBI ptt file)||4, 351|
|CAC2341||CAC2341||Collagenase family protease (NCBI ptt file)||51, 351|
|CAC2348||CAC2348||Glycosyltransferase (NCBI ptt file)||13, 312|
|CAC2349||CAC2349||Hypothetical protein (NCBI ptt file)||13, 100|
|CAC2453||CAC2453||CBS domain containing protein (NCBI ptt file)||13, 346|
|CAC2478||CAC2478||Predicted conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||13, 149|
|CAC2554||CAC2554||Hypothetical protein (NCBI ptt file)||13, 346|
|CAC2555||CAC2555||Hypothetical protein (NCBI ptt file)||13, 149|
|CAC2559||CAC2559||Hypothetical protein (NCBI ptt file)||183, 351|
|CAC2566||CAC2566||Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis (NCBI ptt file)||58, 351|
|CAC2698||CAC2698||Hypothetical protein (NCBI ptt file)||5, 351|
|CAC2900||splB||Spore photoproduct lyase, SPL related protein (NCBI ptt file)||132, 351|
|CAC2901||CAC2901||Predicted membrane protein (NCBI ptt file)||298, 351|
|CAC2907||CAC2907||Glycosyltransferase (NCBI ptt file)||13, 117|
|CAC2939||CAC2939||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||258, 351|
|CAC3091||CAC3091||Fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I (NCBI ptt file)||3, 13|
|CAC3240||CAC3240||Predicted membrane protein (NCBI ptt file)||13, 150|
|CAC3265||CAC3265||Predicted membrane protein (NCBI ptt file)||13, 99|
|CAC3391||CAC3391||Membrane associated signal transduction histidine kinase (NCBI ptt file)||51, 351|
|CAC3404||CAC3404||Uncharactecterized conserved membrane protein, possible ABC-type MDR permease (NCBI ptt file)||246, 351|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3596||pgsA||Phosphatidylglycerophosphate synthase (NCBI ptt file)||13, 99|
|CAC3692||CAC3692||Hypothetical protein (NCBI ptt file)||13, 196|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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