Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0200c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj0200c
|Gene||Common Name||Description||Module membership|
|Cj0008||Cj0008||hypothetical protein Cj0008 (NCBI ptt file)||86, 119|
|Cj0026c||Cj0026c||hypothetical protein Cj0026c (NCBI ptt file)||50, 68|
|Cj0042||flgD||putative flagellar hook assembly protein (NCBI ptt file)||86, 130|
|Cj0061c||fliA||putative RNA polymerase sigma factor for flagellar operon (NCBI ptt file)||68, 139|
|Cj0126c||Cj0126c||hypothetical protein Cj0126c (NCBI ptt file)||17, 68|
|Cj0158c||Cj0158c||putative haem-binding lipoprotein (NCBI ptt file)||68, 149|
|Cj0200c||Cj0200c||putative periplasmic protein (NCBI ptt file)||68, 86|
|Cj0277||Cj0277||putative periplasmic protein (NCBI ptt file)||46, 68|
|Cj0344||Cj0344||hypothetical protein Cj0344 (NCBI ptt file)||68, 121|
|Cj0357c||Cj0357c||putative integral membrane protein (NCBI ptt file)||33, 86|
|Cj0364||Cj0364||hypothetical protein Cj0364 (NCBI ptt file)||49, 68|
|Cj0462||Cj0462||hypothetical protein Cj0462 (NCBI ptt file)||68, 157|
|Cj0526c||fliE||putative flagellar hook-basal body complex protein (NCBI ptt file)||86, 130|
|Cj0528c||flgB||putative flagellar basal-body rod protein (NCBI ptt file)||86, 130|
|Cj0606||Cj0606||putative periplasmic protein (NCBI ptt file)||86, 132|
|Cj0617||Cj0617||hypothetical protein Cj0617 (617 family) (NCBI ptt file)||23, 68|
|Cj0665c||argG||argininosuccinate synthase (NCBI ptt file)||86, 98|
|Cj0671||dcuB||putative anaerobic C4-dicarboxylate transporter (NCBI ptt file)||39, 86|
|Cj0687c||flgH||putative flagellar L-ring protein precursor (NCBI ptt file)||39, 86|
|Cj0688||pta||putative phosphate acetyltransferase (NCBI ptt file)||86, 119|
|Cj0689||ackA||acetate kinase (NCBI ptt file)||86, 119|
|Cj0697||flgG2||putative flagellar basal-body rod protein (NCBI ptt file)||86, 130|
|Cj0698||flgG||flagellar basal-body rod protein (NCBI ptt file)||86, 130|
|Cj0720c||flaC||flagellin (NCBI ptt file)||86, 144|
|Cj0726c||corA||magnesium and cobalt transport protein (NCBI ptt file)||86, 127|
|Cj0764c||speA||biosynthetic arginine decarboxylase (NCBI ptt file)||68, 89|
|Cj0858c||murA||UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file)||68, 98|
|Cj0931c||argH||argininosuccinate lyase (NCBI ptt file)||86, 133|
|Cj1026c||Cj1026c||putative lipoprotein (NCBI ptt file)||86, 130|
|Cj1087c||Cj1087c||putative periplasmic protein (NCBI ptt file)||68, 118|
|Cj1155c||Cj1155c||putative cation-transporting ATPase (NCBI ptt file)||46, 68|
|Cj1172c||Cj1172c||hypothetical protein Cj1172c (NCBI ptt file)||68, 123|
|Cj1213c||glcD||putative glycolate oxidase subunit D (NCBI ptt file)||49, 68|
|Cj1259||porA||major outer membrane protein (NCBI ptt file)||68, 121|
|Cj1261||racR||two-component regulator (NCBI ptt file)||20, 68|
|Cj1339c||flaA||flagellin (NCBI ptt file)||20, 68|
|Cj1360c||Cj1360c||putative proteolysis tag for 10Sa_RNA (NCBI ptt file)||86, 96|
|Cj1368||Cj1368||hypothetical protein Cj1368 (NCBI ptt file)||68, 121|
|Cj1462||flgI||flagellar P-ring protein (NCBI ptt file)||86, 130|
|Cj1463||Cj1463||hypothetical protein Cj1463 (NCBI ptt file)||28, 86|
|Cj1465||Cj1465||hypothetical protein Cj1465 (NCBI ptt file)||42, 86|
|Cj1466||flgK||putative flagellar hook-associated protein (NCBI ptt file)||67, 86|
|Cj1536c||galU||UTP--glucose-1-phosphate uridylyltransferase (NCBI ptt file)||86, 120|
|Cj1555c||Cj1555c||hypothetical protein Cj1555c (NCBI ptt file)||31, 68|
|Cj1575c||Cj1575c||hypothetical protein Cj1575c (NCBI ptt file)||10, 86|
|Cj1605c||dapD||possible 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI ptt file)||49, 68|
|Cj1626c||Cj1626c||putative periplasmic protein (NCBI ptt file)||86, 133|
|Cj1650||Cj1650||hypothetical protein Cj1650 (NCBI ptt file)||86, 91|
|Cjr06||Cjr06||5S ribosomal RNA (NCBI)||49, 68|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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