Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0617(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj0617
|Gene||Common Name||Description||Module membership|
|Cj0026c||Cj0026c||hypothetical protein Cj0026c (NCBI ptt file)||50, 68|
|Cj0061c||fliA||putative RNA polymerase sigma factor for flagellar operon (NCBI ptt file)||68, 139|
|Cj0099||birA||putative biotin--[acetyl-CoA-carboxylase] synthetase (NCBI ptt file)||23, 146|
|Cj0124c||Cj0124c||putative membrane protein (NCBI ptt file)||23, 141|
|Cj0125c||Cj0125c||dksA-like protein (NCBI ptt file)||17, 23|
|Cj0126c||Cj0126c||hypothetical protein Cj0126c (NCBI ptt file)||17, 68|
|Cj0132||lpxC||UDP-3-O-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase (NCBI ptt file)||23, 61|
|Cj0134||thrB||homoserine kinase (NCBI ptt file)||22, 23|
|Cj0158c||Cj0158c||putative haem-binding lipoprotein (NCBI ptt file)||68, 149|
|Cj0181||tonB1||possible tonB transport protein (NCBI ptt file)||23, 51|
|Cj0184c||Cj0184c||possible serine||23, 101|
|Cj0200c||Cj0200c||putative periplasmic protein (NCBI ptt file)||68, 86|
|Cj0230c||Cj0230c||hypothetical protein Cj0230c (NCBI ptt file)||23, 101|
|Cj0255c||Cj0255c||exodeoxyribonuclease (NCBI ptt file)||7, 23|
|Cj0267c||Cj0267c||putative integral membrane protein (NCBI ptt file)||12, 23|
|Cj0277||Cj0277||putative periplasmic protein (NCBI ptt file)||46, 68|
|Cj0295||Cj0295||putative acetyltransferase (NCBI ptt file)||23, 26|
|Cj0344||Cj0344||hypothetical protein Cj0344 (NCBI ptt file)||68, 121|
|Cj0364||Cj0364||hypothetical protein Cj0364 (NCBI ptt file)||49, 68|
|Cj0460||nusA||transcription termination factor (NCBI ptt file)||23, 76|
|Cj0462||Cj0462||hypothetical protein Cj0462 (NCBI ptt file)||68, 157|
|Cj0503c||hemH||putative ferrochelatase (NCBI ptt file)||23, 96|
|Cj0522||Cj0522||putative membrane protein (NCBI ptt file)||23, 125|
|Cj0523||Cj0523||putative membrane protein (NCBI ptt file)||23, 101|
|Cj0546||Cj0546||hypothetical protein Cj0546 (NCBI ptt file)||23, 62|
|Cj0617||Cj0617||hypothetical protein Cj0617 (617 family) (NCBI ptt file)||23, 68|
|Cj0747||Cj0747||hypothetical protein Cj0747 (NCBI ptt file)||23, 96|
|Cj0764c||speA||biosynthetic arginine decarboxylase (NCBI ptt file)||68, 89|
|Cj0849c||Cj0849c||hypothetical protein Cj0849c (NCBI ptt file)||23, 37|
|Cj0858c||murA||UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file)||68, 98|
|Cj0882c||flhA||flagellar biosynthesis protein (NCBI ptt file)||23, 143|
|Cj0904c||Cj0904c||putative RNA methylase (NCBI ptt file)||23, 27|
|Cj0952c||Cj0952c||putative membrane protein (NCBI ptt file)||23, 27|
|Cj1087c||Cj1087c||putative periplasmic protein (NCBI ptt file)||68, 118|
|Cj1155c||Cj1155c||putative cation-transporting ATPase (NCBI ptt file)||46, 68|
|Cj1172c||Cj1172c||hypothetical protein Cj1172c (NCBI ptt file)||68, 123|
|Cj1213c||glcD||putative glycolate oxidase subunit D (NCBI ptt file)||49, 68|
|Cj1245c||Cj1245c||putative membrane protein (NCBI ptt file)||23, 96|
|Cj1254||Cj1254||hypothetical protein Cj1254 (NCBI ptt file)||23, 106|
|Cj1259||porA||major outer membrane protein (NCBI ptt file)||68, 121|
|Cj1261||racR||two-component regulator (NCBI ptt file)||20, 68|
|Cj1262||racS||two-component sensor (histidine kinase) (NCBI ptt file)||23, 24|
|Cj1337||Cj1337||hypothetical protein Cj1337 (NCBI ptt file)||23, 134|
|Cj1339c||flaA||flagellin (NCBI ptt file)||20, 68|
|Cj1368||Cj1368||hypothetical protein Cj1368 (NCBI ptt file)||68, 121|
|Cj1373||Cj1373||putative integral membrane protein (NCBI ptt file)||23, 58|
|Cj1443c||kpsF||KpsF protein (NCBI ptt file)||23, 109|
|Cj1452||Cj1452||putative integral membrane protein (NCBI ptt file)||23, 89|
|Cj1473c||Cj1473c||putative ATP/GTP-binding protein (NCBI ptt file)||23, 96|
|Cj1481c||Cj1481c||putative helicase (NCBI ptt file)||23, 108|
|Cj1482c||Cj1482c||hypothetical protein Cj1482c (NCBI ptt file)||23, 37|
|Cj1555c||Cj1555c||hypothetical protein Cj1555c (NCBI ptt file)||31, 68|
|Cj1583c||Cj1583c||putative peptide ABC-transport system permease protein (NCBI ptt file)||23, 56|
|Cj1605c||dapD||possible 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI ptt file)||49, 68|
|Cjr06||Cjr06||5S ribosomal RNA (NCBI)||49, 68|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
- 3. Target genes (other module members)
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