31929 (GGPS5) Trans_IPPS_HT
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
31929 chr_2 (GGPS5) Trans_IPPS_HT 2052432 2053986 - Trans_IPPS_HT
NCBI ID Ensembl Genomes exon ID
7452498 Thaps31929.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229
Normalized Mean Residue
Thaps_bicluster_0162
0.37
HA2
0.9138
Aldolase_II superfamily
0.9112
hypothetical protein
0.909
(TCP1) TCP1_gamma
0.9082
FIG superfamily
0.9041
PTZ00248
0.904
SAICAR_synt_Sc
0.9025
tsf
0.9003
Aldolase_Class_I superfamily
0.898
(RM12) Ribosomal_L7_L12
0.8973
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail; These trans-Isoprenyl Diphosphate Synthases (... cl00210 257.865 6.26E-82 201 - 515 specific 173833
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 257.865 6.26E-82 201 - 515 superfamily 260263
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16615 PHATRDRAFT_16615 213806 264726 Not available Not available Not available 336262
KEGG description KEGG Pathway
Not available Not available
GO:0008299 GO:0004659 GO:0004660 GO:0004661 GO:0004662 GO:0004663 GO:0008318 GO:0008412 GO:0008495 GO:0046428 -

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

prenyltransferase activity

Details: 
Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

protein farnesyltransferase activity

Details: 
Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate.
GO Category: 
MF

protein geranylgeranyltransferase activity

Details: 
Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
GO Category: 
MF

CAAX-protein geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
GO Category: 
MF

Rab geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
GO Category: 
MF

protein prenyltransferase activity

Details: 
Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
GO Category: 
MF

4-hydroxybenzoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: farnesylfarnesylgeranyl diphosphate + p-hydroxybenzoate = 3-octaprenyl-4-hydroxybenzoate + diphosphate.
GO Category: 
MF

protoheme IX farnesyltransferase activity

Details: 
Catalysis of the reaction: protoheme IX + (2E,6E)-farnesyl diphosphate + H2O = heme o + diphosphate.
GO Category: 
MF

1,4-dihydroxy-2-naphthoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: 1,4-dihydroxy-2-naphthoate + polyprenylpyrophosphate = dimethylmenaquinone + diphosphate + CO2.
GO Category: 
MF
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