Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0191(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0191
Module neighborhood information for GSU0191
|Gene||Common Name||Description||Module membership|
|GSU0012||hemG||protoporphyrinogen oxidase (VIMSS)||16, 134|
|GSU0014||dnaJ||phage prohead protease, HK97 family/dnaJ domain protein (NCBI)||16, 134|
|GSU0117||GSU0117||aminotransferase, classes I and II (NCBI)||7, 248|
|GSU0133||GSU0133||hypothetical protein (VIMSS)||16, 86|
|GSU0177||GSU0177||acetyltransferase, GNAT family (NCBI)||16, 60|
|GSU0191||GSU0191||cold-shock domain family protein (VIMSS)||16, 248|
|GSU0209||GSU0209||hypothetical protein (VIMSS)||16, 109|
|GSU0467||GSU0467||hypothetical protein (VIMSS)||16, 86|
|GSU0491||rhlE-1||ATP-dependent RNA helicase RhlE (NCBI)||16, 25|
|GSU0550||GSU0550||conserved hypothetical protein (VIMSS)||16, 55|
|GSU0558||GSU0558||hypothetical protein (VIMSS)||16, 174|
|GSU0581||GSU0581||cold-shock domain family protein (VIMSS)||102, 248|
|GSU0674||hcP-1||hydroxylamine reductase (RefSeq)||16, 214|
|GSU0731||lpxC||UDP-3-0-acyl N-acetylglucosamine deacetylase (NCBI)||16, 140|
|GSU0733||GSU0733||cell shape-determining protein MreB/Mrl family (VIMSS)||15, 16|
|GSU0771||GSU0771||alcohol dehydrogenase, zinc-containing (VIMSS)||16, 257|
|GSU0773||GSU0773||multidrug resistance protein, putative (VIMSS)||16, 257|
|GSU0852||GSU0852||lipoprotein, putative (VIMSS)||16, 65|
|GSU0906||rpsU-1||ribosomal protein S21 (NCBI)||11, 248|
|GSU0919||GSU0919||hypothetical protein (VIMSS)||16, 110|
|GSU1024||cyd-4||cytochrome c3 (NCBI)||16, 20|
|GSU1082||GSU1082||conserved hypothetical protein (VIMSS)||16, 77|
|GSU1096||pstB||phosphate ABC transporter, ATP-binding protein (NCBI)||16, 236|
|GSU1277||greA||transcription elongation factor GreA (NCBI)||19, 248|
|GSU1278||GSU1278||conserved hypothetical protein (VIMSS)||170, 248|
|GSU1317||ispB||octaprenyl-diphosphate synthase (NCBI)||233, 248|
|GSU1318||GSU1318||hypothetical protein (VIMSS)||83, 248|
|GSU1583||bioD||dethiobiotin synthase (NCBI)||120, 248|
|GSU1585||GSU1585||conserved hypothetical protein (VIMSS)||120, 248|
|GSU1586||nusA||N utilization substance protein A (NCBI)||120, 248|
|GSU1587||GSU1587||ribosomal protein L7Ae family protein (NCBI)||120, 248|
|GSU1588||infB||translation initiation factor IF-2 (NCBI)||120, 248|
|GSU1589||rbfA||ribosome-binding factor A (NCBI)||120, 248|
|GSU1591||truB||tRNA pseudouridine synthase B (NCBI)||120, 248|
|GSU1592||rpsO||ribosomal protein S15 (NCBI)||120, 248|
|GSU1593||pnp||polyribonucleotide nucleotidyltransferase (NCBI)||120, 248|
|GSU1760||cyd-5||cytochrome c3 (NCBI)||30, 248|
|GSU1794||GSU1794||HAM1 protein (NCBI)||158, 248|
|GSU1907||pssA||CDP-diacylglycerol--serineO-phosphatidyltransferase (NCBI)||102, 248|
|GSU1918||frr||ribosome recycling factor (NCBI)||230, 248|
|GSU1925||GSU1925||transport-associated domain protein (NCBI)||120, 248|
|GSU2072||GSU2072||1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (VIMSS)||7, 248|
|GSU2115||GSU2115||hypothetical protein (VIMSS)||1, 16|
|GSU2389||GSU2389||ABC transporter, periplasmic substrate-binding protein, putative (NCBI)||16, 55|
|GSU2625||GSU2625||transcriptional regulator, ArsR family (NCBI)||120, 248|
|GSU2695||GSU2695||outer membrane efflux protein (VIMSS)||16, 86|
|GSU2696||GSU2696||AcrB/AcrD/AcrF family protein (VIMSS)||16, 26|
|GSU2697||GSU2697||multidrug resistance protein (NCBI)||16, 86|
|GSU3006||cobB||cobyrinic acid a,c-diamide synthase (NCBI)||30, 248|
|GSU3091||cvpA||CvpA family protein (NCBI)||16, 236|
|GSU3154||GSU3154||cytochrome c nitrite reductase, catalytic subunit NrfA, putative (VIMSS)||16, 82|
|GSU3156||GSU3156||methyl-accepting chemotaxis protein, putative (VIMSS)||16, 153|
|GSU3225||GSU3225||NHL repeat domain protein (VIMSS)||16, 155|
|GSU3298||GSU3298||transcriptional regulator, Cro/CI family (VIMSS)||7, 248|
|GSU3301||GSU3301||conserved hypothetical protein (NCBI)||106, 248|
|GSU3365||cysS||cysteinyl-tRNA synthetase (NCBI)||83, 248|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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