Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1918(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1918
Module neighborhood information for GSU1918
|Gene||Common Name||Description||Module membership|
|GSU0097||GSU0097||pyruvate ferredoxin/flavodoxin oxidoreductase (VIMSS)||30, 230|
|GSU0114||atpC||ATP synthase F1, epsilon subunit (NCBI)||170, 230|
|GSU0117||GSU0117||aminotransferase, classes I and II (NCBI)||7, 248|
|GSU0179||GSU0179||NADPH-dependent FMN reductase domain protein (NCBI)||202, 230|
|GSU0191||GSU0191||cold-shock domain family protein (VIMSS)||16, 248|
|GSU0342||nuoE-1||NADH dehydrogenase I, E subunit (NCBI)||230, 243|
|GSU0344||GSU0344||NADH dehydrogenase I, G subunit, putative (NCBI)||230, 305|
|GSU0391||GSU0391||Outer membrane efflux family protein (VIMSS)||216, 230|
|GSU0581||GSU0581||cold-shock domain family protein (VIMSS)||102, 248|
|GSU0906||rpsU-1||ribosomal protein S21 (NCBI)||11, 248|
|GSU1108||GSU1108||aldehyde dehydrogenase family protein (NCBI)||230, 327|
|GSU1277||greA||transcription elongation factor GreA (NCBI)||19, 248|
|GSU1278||GSU1278||conserved hypothetical protein (VIMSS)||170, 248|
|GSU1312||GSU1312||radical SAM domain protein, selenocysteine-containing (NCBI)||139, 230|
|GSU1317||ispB||octaprenyl-diphosphate synthase (NCBI)||233, 248|
|GSU1318||GSU1318||hypothetical protein (VIMSS)||83, 248|
|GSU1483||GSU1483||transcriptional regulator, MarR family (VIMSS)||137, 230|
|GSU1583||bioD||dethiobiotin synthase (NCBI)||120, 248|
|GSU1585||GSU1585||conserved hypothetical protein (VIMSS)||120, 248|
|GSU1586||nusA||N utilization substance protein A (NCBI)||120, 248|
|GSU1587||GSU1587||ribosomal protein L7Ae family protein (NCBI)||120, 248|
|GSU1588||infB||translation initiation factor IF-2 (NCBI)||120, 248|
|GSU1589||rbfA||ribosome-binding factor A (NCBI)||120, 248|
|GSU1591||truB||tRNA pseudouridine synthase B (NCBI)||120, 248|
|GSU1592||rpsO||ribosomal protein S15 (NCBI)||120, 248|
|GSU1593||pnp||polyribonucleotide nucleotidyltransferase (NCBI)||120, 248|
|GSU1760||cyd-5||cytochrome c3 (NCBI)||30, 248|
|GSU1794||GSU1794||HAM1 protein (NCBI)||158, 248|
|GSU1907||pssA||CDP-diacylglycerol--serineO-phosphatidyltransferase (NCBI)||102, 248|
|GSU1918||frr||ribosome recycling factor (NCBI)||230, 248|
|GSU1925||GSU1925||transport-associated domain protein (NCBI)||120, 248|
|GSU2072||GSU2072||1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (VIMSS)||7, 248|
|GSU2625||GSU2625||transcriptional regulator, ArsR family (NCBI)||120, 248|
|GSU2634||GSU2634||hypothetical protein (VIMSS)||195, 230|
|GSU2637||GSU2637||alcohol dehydrogenase, zinc-containing (VIMSS)||129, 230|
|GSU3006||cobB||cobyrinic acid a,c-diamide synthase (NCBI)||30, 248|
|GSU3037||fliD||flagellar hook-associated protein 2 (NCBI)||150, 230|
|GSU3063||ftsZ||cell division protein FtsZ (NCBI)||230, 264|
|GSU3123||GSU3123||aldehyde ferredoxin oxidoreductase domain protein (VIMSS)||137, 230|
|GSU3125||GSU3125||alcohol dehydrogenase, zinc-containing (VIMSS)||137, 230|
|GSU3298||GSU3298||transcriptional regulator, Cro/CI family (VIMSS)||7, 248|
|GSU3300||GSU3300||biotin-requiring enzyme subunit (NCBI)||230, 327|
|GSU3301||GSU3301||conserved hypothetical protein (NCBI)||106, 248|
|GSU3303||GSU3303||methylmalonyl-CoA epimerase (VIMSS)||106, 230|
|GSU3365||cysS||cysteinyl-tRNA synthetase (NCBI)||83, 248|
|GSU3466||GSU3466||membrane protein, putative (VIMSS)||230, 315|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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