Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3156(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU3156
Module neighborhood information for GSU3156
|Gene||Common Name||Description||Module membership|
|GSU0012||hemG||protoporphyrinogen oxidase (VIMSS)||16, 134|
|GSU0014||dnaJ||phage prohead protease, HK97 family/dnaJ domain protein (NCBI)||16, 134|
|GSU0133||GSU0133||hypothetical protein (VIMSS)||16, 86|
|GSU0177||GSU0177||acetyltransferase, GNAT family (NCBI)||16, 60|
|GSU0191||GSU0191||cold-shock domain family protein (VIMSS)||16, 248|
|GSU0209||GSU0209||hypothetical protein (VIMSS)||16, 109|
|GSU0376||gcvH-1||glycine cleavage system H protein (NCBI)||153, 296|
|GSU0377||GSU0377||glycine cleavage system P protein, subunit 1 (VIMSS)||153, 296|
|GSU0378||GSU0378||glycine cleavage system P protein, subunit 2 (VIMSS)||153, 296|
|GSU0379||GSU0379||biotin/lipoate A/B protein ligase family protein (NCBI)||153, 296|
|GSU0380||lipA||lipoic acid synthetase (NCBI)||153, 296|
|GSU0382||GSU0382||conserved hypothetical protein (VIMSS)||153, 296|
|GSU0467||GSU0467||hypothetical protein (VIMSS)||16, 86|
|GSU0491||rhlE-1||ATP-dependent RNA helicase RhlE (NCBI)||16, 25|
|GSU0498||GSU0498||hypothetical protein (VIMSS)||153, 272|
|GSU0550||GSU0550||conserved hypothetical protein (VIMSS)||16, 55|
|GSU0558||GSU0558||hypothetical protein (VIMSS)||16, 174|
|GSU0674||hcP-1||hydroxylamine reductase (RefSeq)||16, 214|
|GSU0731||lpxC||UDP-3-0-acyl N-acetylglucosamine deacetylase (NCBI)||16, 140|
|GSU0733||GSU0733||cell shape-determining protein MreB/Mrl family (VIMSS)||15, 16|
|GSU0750||GSU0750||methyl-accepting chemotaxis protein, putative (VIMSS)||25, 153|
|GSU0771||GSU0771||alcohol dehydrogenase, zinc-containing (VIMSS)||16, 257|
|GSU0773||GSU0773||multidrug resistance protein, putative (VIMSS)||16, 257|
|GSU0852||GSU0852||lipoprotein, putative (VIMSS)||16, 65|
|GSU0919||GSU0919||hypothetical protein (VIMSS)||16, 110|
|GSU0970||GSU0970||conserved hypothetical protein (VIMSS)||153, 253|
|GSU0971||prfA||peptidyl-tRNA hydrolase domain protein (NCBI)||153, 178|
|GSU1024||cyd-4||cytochrome c3 (NCBI)||16, 20|
|GSU1052||GSU1052||hydrolase, alpha/beta fold family (VIMSS)||122, 153|
|GSU1054||GSU1054||conserved hypothetical protein (VIMSS)||34, 153|
|GSU1055||GSU1055||membrane protein, putative (VIMSS)||78, 153|
|GSU1082||GSU1082||conserved hypothetical protein (VIMSS)||16, 77|
|GSU1096||pstB||phosphate ABC transporter, ATP-binding protein (NCBI)||16, 236|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1571||GSU1571||conserved domain protein (NCBI)||121, 153|
|GSU2115||GSU2115||hypothetical protein (VIMSS)||1, 16|
|GSU2124||GSU2124||thioredoxin-related domain protein (VIMSS)||78, 153|
|GSU2157||nrd||conserved domain protein (NCBI)||70, 153|
|GSU2161||GSU2161||hypothetical protein (VIMSS)||78, 153|
|GSU2340||GSU2340||Na+/H+ ion antiporter family protein (NCBI)||153, 225|
|GSU2389||GSU2389||ABC transporter, periplasmic substrate-binding protein, putative (NCBI)||16, 55|
|GSU2588||lpdA-2||alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase (NCBI)||75, 153|
|GSU2695||GSU2695||outer membrane efflux protein (VIMSS)||16, 86|
|GSU2696||GSU2696||AcrB/AcrD/AcrF family protein (VIMSS)||16, 26|
|GSU2697||GSU2697||multidrug resistance protein (NCBI)||16, 86|
|GSU2992||cobQ||cobyric acid synthase (NCBI)||89, 153|
|GSU2994||cobM||precorrin-4 C11-methyltransferase (NCBI)||153, 156|
|GSU3027||GSU3027||chemotaxis MotA protein (VIMSS)||153, 286|
|GSU3091||cvpA||CvpA family protein (NCBI)||16, 236|
|GSU3154||GSU3154||cytochrome c nitrite reductase, catalytic subunit NrfA, putative (VIMSS)||16, 82|
|GSU3156||GSU3156||methyl-accepting chemotaxis protein, putative (VIMSS)||16, 153|
|GSU3162||GSU3162||L-allo-threonine aldolase (VIMSS)||148, 153|
|GSU3225||GSU3225||NHL repeat domain protein (VIMSS)||16, 155|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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