Organism : Geobacter sulfurreducens | Module List :
methyl-accepting chemotaxis protein (VIMSS)
Functional Annotations (5)
|Methyl-accepting chemotaxis protein||cog/ cog|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for GSU0583(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0583
Module neighborhood information for GSU0583
|Gene||Common Name||Description||Module membership|
|GSU0057||GSU0057||CRISPR-associated protein Cas1/Cas4 (NCBI)||157, 195|
|GSU0058||GSU0058||CRISPR-associated protein Cas2, putative (NCBI)||157, 195|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0132||GSU0132||conserved hypothetical protein (VIMSS)||155, 157|
|GSU0178||GSU0178||conserved hypothetical protein (VIMSS)||157, 202|
|GSU0246||GSU0246||polysaccharide deacetylase domain protein (VIMSS)||100, 119|
|GSU0395||GSU0395||conserved hypothetical protein (VIMSS)||94, 157|
|GSU0485||GSU0485||conserved hypothetical protein (VIMSS)||100, 194|
|GSU0583||GSU0583||methyl-accepting chemotaxis protein (VIMSS)||100, 157|
|GSU0584||GSU0584||hypothetical protein (NCBI)||84, 100|
|GSU0684||cheW-2||purine-binding chemotaxis protein CheW (NCBI)||100, 234|
|GSU0692||GSU0692||carbohydrate kinase, PfkB family (VIMSS)||9, 157|
|GSU0693||GSU0693||sensory box histidine kinase (VIMSS)||103, 157|
|GSU0760||GSU0760||hypothetical protein (VIMSS)||151, 157|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU0942||suhB||inositol-1-monophosphatase (NCBI)||157, 193|
|GSU1036||GSU1036||sensor histidine kinase (VIMSS)||53, 157|
|GSU1059||sucD||succinyl-CoA synthase, alpha subunit (NCBI)||100, 326|
|GSU1066||GSU1066||hypothetical protein (NCBI)||4, 157|
|GSU1185||GSU1185||conserved hypothetical protein (VIMSS)||41, 157|
|GSU1299||cheW||purine-binding chemotaxis protein CheW (NCBI)||59, 157|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU2044||GSU2044||sensory box/GGDEF family protein (VIMSS)||100, 264|
|GSU2562||sixA||phosphohistidine phosphatase SixA (NCBI)||140, 157|
|GSU2681||GSU2681||iron-sulfur cluster-binding protein (VIMSS)||100, 320|
|GSU2689||GSU2689||hypothetical protein (VIMSS)||113, 157|
|GSU2753||GSU2753||sigma-54 dependent DNA-binding response regulator (VIMSS)||3, 100|
|GSU2791||GSU2791||hypothetical protein (RefSeq)||65, 157|
|GSU2816||GSU2816||sensory box histidine kinase/response regulator (VIMSS)||72, 100|
|GSU3012||GSU3012||hypothetical protein (VIMSS)||38, 157|
|GSU3057||gltA||glutamate synthase (NADPH), homotetrameric (NCBI)||100, 145|
|GSU3114||GSU3114||hypothetical protein (VIMSS)||4, 100|
|GSU3115||GSU3115||hypothetical protein (VIMSS)||100, 234|
|GSU3130||GSU3130||lipoprotein, putative (VIMSS)||100, 326|
|GSU3138||GSU3138||sensor histidine kinase/response regulator (VIMSS)||100, 326|
|GSU3140||GSU3140||peptidase, M1 family protein (NCBI)||4, 100|
|GSU3200||GSU3200||chemotaxis protein, CheC family (NCBI)||100, 326|
|GSU3240||GSU3240||radical SAM domain protein (NCBI)||100, 264|
|GSU3253||GSU3253||response regulator (VIMSS)||100, 279|
|GSU3254||mpg||phosphoglucomutase/phosphomannomutase family protein (NCBI)||100, 256|
|GSU3255||GSU3255||conserved hypothetical protein (NCBI)||100, 279|
|GSU3324||GSU3324||transcriptional regulator, Cro/CI family (VIMSS)||13, 157|
|GSU3345||GSU3345||hypothetical protein (VIMSS)||113, 157|
|GSU3414||GSU3414||hypothetical protein (VIMSS)||41, 157|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
Identification of functional enrichment for the module members is important in associating predicted motifs and regulatory influences with pathways. As described above, the network inference pipeline includes a functional enrichment module by which hypergeometric p-values are used to identify over representation of functional ontology terms among module members.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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