Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0970(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0970
|Gene||Common Name||Description||Module membership|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0250||GSU0250||conserved hypothetical protein (VIMSS)||25, 253|
|GSU0279||GSU0279||cadherin domain/calx-beta domain protein (NCBI)||45, 253|
|GSU0289||GSU0289||conserved hypothetical protein (VIMSS)||8, 253|
|GSU0376||gcvH-1||glycine cleavage system H protein (NCBI)||153, 296|
|GSU0377||GSU0377||glycine cleavage system P protein, subunit 1 (VIMSS)||153, 296|
|GSU0378||GSU0378||glycine cleavage system P protein, subunit 2 (VIMSS)||153, 296|
|GSU0379||GSU0379||biotin/lipoate A/B protein ligase family protein (NCBI)||153, 296|
|GSU0380||lipA||lipoic acid synthetase (NCBI)||153, 296|
|GSU0382||GSU0382||conserved hypothetical protein (VIMSS)||153, 296|
|GSU0474||GSU0474||sensory box/GGDEF family protein (VIMSS)||40, 253|
|GSU0498||GSU0498||hypothetical protein (VIMSS)||153, 272|
|GSU0566||GSU0566||glutaredoxin family protein (NCBI)||47, 253|
|GSU0621||GSU0621||hypothetical protein (NCBI)||60, 253|
|GSU0750||GSU0750||methyl-accepting chemotaxis protein, putative (VIMSS)||25, 153|
|GSU0853||GSU0853||CBS domain protein (VIMSS)||65, 253|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0970||GSU0970||conserved hypothetical protein (VIMSS)||153, 253|
|GSU0971||prfA||peptidyl-tRNA hydrolase domain protein (NCBI)||153, 178|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1047||GSU1047||conserved hypothetical protein (VIMSS)||181, 253|
|GSU1052||GSU1052||hydrolase, alpha/beta fold family (VIMSS)||122, 153|
|GSU1054||GSU1054||conserved hypothetical protein (VIMSS)||34, 153|
|GSU1055||GSU1055||membrane protein, putative (VIMSS)||78, 153|
|GSU1190||GSU1190||conserved hypothetical protein (VIMSS)||46, 253|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1548||GSU1548||hypothetical protein (VIMSS)||40, 253|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1571||GSU1571||conserved domain protein (NCBI)||121, 153|
|GSU1573||GSU1573||CAAX amino terminal protease family protein (NCBI)||181, 253|
|GSU1770||GSU1770||hypothetical protein (VIMSS)||133, 253|
|GSU2082||GSU2082||conserved hypothetical protein (VIMSS)||253, 321|
|GSU2116||GSU2116||hypothetical protein (VIMSS)||181, 253|
|GSU2124||GSU2124||thioredoxin-related domain protein (VIMSS)||78, 153|
|GSU2157||nrd||conserved domain protein (NCBI)||70, 153|
|GSU2159||GSU2159||hypothetical protein (VIMSS)||6, 253|
|GSU2161||GSU2161||hypothetical protein (VIMSS)||78, 153|
|GSU2340||GSU2340||Na+/H+ ion antiporter family protein (NCBI)||153, 225|
|GSU2588||lpdA-2||alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase (NCBI)||75, 153|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2772||GSU2772||ISGsu3, transposase (VIMSS)||84, 253|
|GSU2930||GSU2930||cytochrome c family protein (VIMSS)||253, 321|
|GSU2992||cobQ||cobyric acid synthase (NCBI)||89, 153|
|GSU2994||cobM||precorrin-4 C11-methyltransferase (NCBI)||153, 156|
|GSU3027||GSU3027||chemotaxis MotA protein (VIMSS)||153, 286|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3156||GSU3156||methyl-accepting chemotaxis protein, putative (VIMSS)||16, 153|
|GSU3162||GSU3162||L-allo-threonine aldolase (VIMSS)||148, 153|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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