Organism : Geobacter sulfurreducens | Module List :
signal peptide peptidase SppA, 36K type (NCBI)
Functional Annotations (5)
|Periplasmic serine proteases (ClpP class)||cog/ cog|
|peptidase activity||go/ molecular_function|
|endopeptidase Clp activity||go/ molecular_function|
Regulation information for GSU1234(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1234
Module neighborhood information for GSU1234
|Gene||Common Name||Description||Module membership|
|GSU0006||gpsA||glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI)||35, 254|
|GSU0100||GSU0100||hypothetical protein (VIMSS)||88, 299|
|GSU0145||recA||recA protein (NCBI)||35, 233|
|GSU0180||GSU0180||conserved hypothetical protein (VIMSS)||35, 202|
|GSU0256||GSU0256||conserved hypothetical protein (NCBI)||88, 319|
|GSU0280||GSU0280||transcriptional regulator, Fis family (VIMSS)||76, 88|
|GSU0303||GSU0303||sensory box protein (VIMSS)||22, 35|
|GSU0335||GSU0335||hypothetical protein (VIMSS)||35, 170|
|GSU0511||GSU0511||conserved domain protein (NCBI)||35, 231|
|GSU0609||purH||phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI)||88, 231|
|GSU0661||prsA||ribose-phosphate pyrophosphokinase (NCBI)||35, 81|
|GSU0664||ychF||GTP binding protein YchF (NCBI)||35, 161|
|GSU0816||GSU0816||ABC transporter, ATP-binding protein (VIMSS)||88, 158|
|GSU0888||GSU0888||hypothetical protein (NCBI)||35, 202|
|GSU1073||GSU1073||conserved hypothetical protein (VIMSS)||35, 260|
|GSU1217||GSU1217||hypothetical protein (VIMSS)||88, 146|
|GSU1230||GSU1230||conserved hypothetical protein (VIMSS)||35, 205|
|GSU1234||sppA-2||signal peptide peptidase SppA, 36K type (NCBI)||35, 88|
|GSU1292||GSU1292||sensory box histidine kinase (VIMSS)||35, 295|
|GSU1390||GSU1390||DNA-binding protein (NCBI)||88, 249|
|GSU1459||ispG||1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (NCBI)||35, 245|
|GSU1509||GSU1509||glycosyl transferase, group 2 family protein (VIMSS)||88, 124|
|GSU1598||GSU1598||conserved hypothetical protein (NCBI)||35, 267|
|GSU1638||GSU1638||conserved domain protein (NCBI)||88, 314|
|GSU1667||GSU1667||hypothetical protein (VIMSS)||88, 124|
|GSU1672||hprA||glycerate dehydrogenase (NCBI)||35, 314|
|GSU1705||panB||3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI)||88, 290|
|GSU1795||rph||ribonuclease PH (NCBI)||35, 158|
|GSU1825||pgsA||CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (VIMSS)||35, 267|
|GSU1910||ilvN||acetolactate synthase, small subunit (NCBI)||88, 276|
|GSU1962||GSU1962||glycosyl transferase, group 2 family protein (VIMSS)||88, 191|
|GSU1996||GSU1996||cytochrome c family protein (NCBI)||35, 154|
|GSU2060||GSU2060||pmbA protein, putative (VIMSS)||4, 88|
|GSU2061||argA||acetyltransferase, GNAT family (NCBI)||4, 88|
|GSU2062||GSU2062||GGDEF domain protein (VIMSS)||4, 88|
|GSU2063||GSU2063||HD domain protein (NCBI)||4, 88|
|GSU2066||glgP||glycogen phosphorylase (NCBI)||88, 201|
|GSU2067||GSU2067||ATPase, AAA family (VIMSS)||88, 327|
|GSU2068||GSU2068||6-phosphofructokinase (VIMSS)||88, 121|
|GSU2234||rpmB||ribosomal protein L28 (NCBI)||35, 340|
|GSU2371||trpA||tryptophan synthase, alpha subunit (NCBI)||88, 148|
|GSU2376||GSU2376||hypothetical protein (VIMSS)||88, 327|
|GSU2439||relE||RelE protein (NCBI)||88, 269|
|GSU2474||GSU2474||hypothetical protein (VIMSS)||88, 181|
|GSU2627||bioC||biotin biosynthesis protein (Dmitry Rodionov)||88, 149|
|GSU2628||bioH||biotin biosynthesis protein (Dmitry Rodionov)||88, 149|
|GSU2629||bioF||8-amino-7-oxononanoate synthase (NCBI)||88, 149|
|GSU2631||GSU2631||conserved hypothetical protein TIGR00149 (VIMSS)||76, 88|
|GSU2807||GSU2807||conserved hypothetical protein (VIMSS)||35, 202|
|GSU3013||cgpA||GTP-binding protein (NCBI)||19, 35|
|GSU3066||ddl||D-alanine--D-alanine ligase (NCBI)||35, 264|
|GSU3117||ssb-2||single-strand binding protein (NCBI)||35, 228|
|GSU3132||huP-2||DNA-binding protein HU (NCBI)||35, 116|
|GSU3206||dksA||dnaK suppressor protein, putative (NCBI)||18, 35|
|GSU3208||GSU3208||conserved hypothetical protein (NCBI)||88, 121|
|GSU3260||GSU3260||phosphoserine aminotransferase, putative (VIMSS)||35, 126|
|GSU3292||GSU3292||transcriptional regulator, Fur family (VIMSS)||35, 202|
|GSU3293||GSU3293||conserved hypothetical protein (VIMSS)||35, 315|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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