Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2510(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU2510
Module neighborhood information for GSU2510
|Gene||Common Name||Description||Module membership|
|GSU0061||GSU0061||hypothetical protein (VIMSS)||9, 95|
|GSU0063||GSU0063||conserved hypothetical protein (VIMSS)||79, 141|
|GSU0225||GSU0225||hypothetical protein (VIMSS)||79, 84|
|GSU0314||GSU0314||general secretion protein E N-terminal domain protein (NCBI)||79, 278|
|GSU0435||GSU0435||MSHA biogenesis protein MshE, putative (VIMSS)||79, 272|
|GSU0542||GSU0542||GGDEF domain protein (NCBI)||9, 66|
|GSU0599||GSU0599||sensor histidine kinase (VIMSS)||9, 275|
|GSU0683||GSU0683||methyl-accepting chemotaxis protein, putative (VIMSS)||45, 79|
|GSU0691||GSU0691||translation initation factor SUI1, putative (NCBI)||71, 79|
|GSU0692||GSU0692||carbohydrate kinase, PfkB family (VIMSS)||9, 157|
|GSU0701||GSU0701||cytochrome c family protein (NCBI)||79, 206|
|GSU0820||sppA-1||signal peptide peptidase SppA, 36K type (NCBI)||36, 79|
|GSU0843||GSU0843||NADH oxidase, putative (VIMSS)||9, 95|
|GSU0845||GSU0845||Rieske 2Fe-2S family protein (VIMSS)||9, 95|
|GSU0858||GSU0858||TonB-dependent receptor, putative (VIMSS)||9, 164|
|GSU0895||GSU0895||GAF domain/GGDEF domain protein (NCBI)||9, 331|
|GSU0900||GSU0900||hypothetical protein (VIMSS)||79, 272|
|GSU0948||GSU0948||ABC transporter, permease protein, putative (VIMSS)||9, 224|
|GSU1302||GSU1302||sensor histidine kinase/response regulator (VIMSS)||79, 180|
|GSU1327||GSU1327||homocysteine S-methyltransferase domain protein (VIMSS)||79, 260|
|GSU1418||GSU1418||hypothetical protein (VIMSS)||78, 79|
|GSU1439||GSU1439||hypothetical protein (VIMSS)||9, 90|
|GSU1477||lemA||LemA family protein (NCBI)||9, 292|
|GSU1570||GSU1570||membrane protein, TerC family (NCBI)||15, 79|
|GSU1572||GSU1572||ribD domain protein (NCBI)||51, 79|
|GSU1844||GSU1844||IPT/TIG domain protein, putative (VIMSS)||9, 95|
|GSU2095||GSU2095||NADH oxidase, putative (VIMSS)||1, 79|
|GSU2097||GSU2097||carbon monoxide dehydrogenase accessory protein, putative (NCBI)||9, 269|
|GSU2173||GSU2173||lipoprotein, putative (VIMSS)||79, 274|
|GSU2289||GSU2289||nicotinate phosphoribosyltransferase, putative (NCBI)||46, 79|
|GSU2358||GSU2358||isoamylase family protein (VIMSS)||79, 142|
|GSU2360||GSU2360||maltooligosyltrehalose synthase, putative (VIMSS)||63, 79|
|GSU2361||GSU2361||alpha amylase family protein (VIMSS)||9, 142|
|GSU2369||GSU2369||hypothetical protein (VIMSS)||59, 79|
|GSU2384||GSU2384||sensor histidine kinase (VIMSS)||79, 269|
|GSU2416||cheW-8||chemotaxis protein CheW (NCBI)||59, 79|
|GSU2425||GSU2425||O-acetyl-L-homoserine sulfhydrylase (NCBI)||9, 91|
|GSU2453||GSU2453||membrane protein, putative (VIMSS)||51, 79|
|GSU2479||GSU2479||hypothetical protein (VIMSS)||6, 9|
|GSU2493||GSU2493||NHL repeat domain protein (NCBI)||9, 341|
|GSU2509||GSU2509||glycosyl transferase, group 2 family protein (VIMSS)||9, 95|
|GSU2510||GSU2510||hypothetical protein (VIMSS)||9, 79|
|GSU2515||GSU2515||cytochrome c family protein, putative (NCBI)||9, 95|
|GSU2529||fusA-2||translation elongation factor G (NCBI)||9, 46|
|GSU2531||GSU2531||sensory box histidine kinase (VIMSS)||79, 82|
|GSU2578||cheW-9||purine-binding chemotaxis protein CheW (NCBI)||79, 300|
|GSU2582||GSU2582||hypothetical protein (VIMSS)||79, 151|
|GSU2646||GSU2646||hypothetical protein (VIMSS)||79, 304|
|GSU2775||GSU2775||hypothetical protein (VIMSS)||9, 95|
|GSU2776||GSU2776||conserved hypothetical protein (NCBI)||1, 9|
|GSU2880||GSU2880||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||9, 269|
|GSU2931||GSU2931||hypothetical protein (VIMSS)||70, 79|
|GSU3207||gpmA||phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI)||9, 160|
|GSU3313||GSU3313||thiolase, putative (NCBI)||9, 66|
|GSU3420||GSU3420||lipid A biosynthesis lauroyl acyltransferase, putative (VIMSS)||9, 66|
|GSU3423||tkt||transketolase (NCBI)||9, 84|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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