Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0314(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0314
Module neighborhood information for GSU0314
|Gene||Common Name||Description||Module membership|
|GSU0063||GSU0063||conserved hypothetical protein (VIMSS)||79, 141|
|GSU0225||GSU0225||hypothetical protein (VIMSS)||79, 84|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0295||cheR-1||chemotaxis protein methyltransferase CheR (NCBI)||278, 338|
|GSU0314||GSU0314||general secretion protein E N-terminal domain protein (NCBI)||79, 278|
|GSU0413||fliI||flagellum-specific ATP synthase FliI (NCBI)||186, 278|
|GSU0427||GSU0427||lipoprotein, putative (VIMSS)||96, 278|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0432||GSU0432||conserved hypothetical protein (VIMSS)||96, 278|
|GSU0435||GSU0435||MSHA biogenesis protein MshE, putative (VIMSS)||79, 272|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0683||GSU0683||methyl-accepting chemotaxis protein, putative (VIMSS)||45, 79|
|GSU0691||GSU0691||translation initation factor SUI1, putative (NCBI)||71, 79|
|GSU0701||GSU0701||cytochrome c family protein (NCBI)||79, 206|
|GSU0705||GSU0705||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||36, 278|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0759||GSU0759||hypothetical protein (VIMSS)||260, 278|
|GSU0820||sppA-1||signal peptide peptidase SppA, 36K type (NCBI)||36, 79|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU0900||GSU0900||hypothetical protein (VIMSS)||79, 272|
|GSU1042||GSU1042||conserved hypothetical protein (NCBI)||130, 278|
|GSU1156||asnS||asparaginyl-tRNA synthetase (NCBI)||104, 278|
|GSU1164||GSU1164||ABC transporter, permease protein (VIMSS)||130, 278|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1302||GSU1302||sensor histidine kinase/response regulator (VIMSS)||79, 180|
|GSU1327||GSU1327||homocysteine S-methyltransferase domain protein (VIMSS)||79, 260|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1418||GSU1418||hypothetical protein (VIMSS)||78, 79|
|GSU1570||GSU1570||membrane protein, TerC family (NCBI)||15, 79|
|GSU1572||GSU1572||ribD domain protein (NCBI)||51, 79|
|GSU1611||GSU1611||AcrB/AcrD/AcrF family protein (VIMSS)||278, 338|
|GSU1991||GSU1991||CAAX amino terminal protease family protein (NCBI)||222, 278|
|GSU2095||GSU2095||NADH oxidase, putative (VIMSS)||1, 79|
|GSU2114||GSU2114||hypothetical protein (VIMSS)||278, 338|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2123||GSU2123||HD domain protein (NCBI)||104, 278|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2173||GSU2173||lipoprotein, putative (VIMSS)||79, 274|
|GSU2274||fbP-2||FKBP-type peptidyl-prolyl cis-trans isomerase (NCBI)||15, 278|
|GSU2289||GSU2289||nicotinate phosphoribosyltransferase, putative (NCBI)||46, 79|
|GSU2295||GSU2295||hypothetical protein (VIMSS)||141, 278|
|GSU2358||GSU2358||isoamylase family protein (VIMSS)||79, 142|
|GSU2360||GSU2360||maltooligosyltrehalose synthase, putative (VIMSS)||63, 79|
|GSU2369||GSU2369||hypothetical protein (VIMSS)||59, 79|
|GSU2384||GSU2384||sensor histidine kinase (VIMSS)||79, 269|
|GSU2385||GSU2385||hypothetical protein (VIMSS)||82, 278|
|GSU2402||GSU2402||hypothetical protein (VIMSS)||84, 278|
|GSU2416||cheW-8||chemotaxis protein CheW (NCBI)||59, 79|
|GSU2453||GSU2453||membrane protein, putative (VIMSS)||51, 79|
|GSU2510||GSU2510||hypothetical protein (VIMSS)||9, 79|
|GSU2531||GSU2531||sensory box histidine kinase (VIMSS)||79, 82|
|GSU2533||GSU2533||hypothetical protein (VIMSS)||224, 278|
|GSU2578||cheW-9||purine-binding chemotaxis protein CheW (NCBI)||79, 300|
|GSU2582||GSU2582||hypothetical protein (VIMSS)||79, 151|
|GSU2646||GSU2646||hypothetical protein (VIMSS)||79, 304|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU2931||GSU2931||hypothetical protein (VIMSS)||70, 79|
|GSU3031||GSU3031||sigma-54 dependent transcriptional regulator (VIMSS)||69, 278|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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