Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3314(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3314
|Gene||Common Name||Description||Module membership|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0362||GSU0362||hypothetical protein (VIMSS)||142, 183|
|GSU0436||pilT-3||twitching motility protein PilT (NCBI)||78, 183|
|GSU0446||GSU0446||conserved hypothetical protein TIGR00046 (VIMSS)||147, 183|
|GSU0457||GSU0457||lipoprotein, putative (VIMSS)||125, 164|
|GSU0458||GSU0458||(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative (VIMSS)||125, 164|
|GSU0524||GSU0524||conserved hypothetical protein (VIMSS)||47, 164|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0656||ilvE||branched-chain amino acid aminotransferase (NCBI)||75, 183|
|GSU0671||rluC||ribosomal large subunit pseudouridine synthase C (NCBI)||26, 183|
|GSU0751||GSU0751||conserved hypothetical protein (VIMSS)||147, 183|
|GSU0825||GSU0825||pirin family protein (VIMSS)||126, 183|
|GSU0841||GSU0841||sigma-54 dependent DNA-binding response regulator (VIMSS)||164, 281|
|GSU0854||GSU0854||membrane protein (NCBI)||65, 164|
|GSU0858||GSU0858||TonB-dependent receptor, putative (VIMSS)||9, 164|
|GSU0890||ligA||DNA ligase, NAD-dependent (NCBI)||183, 281|
|GSU0894||ppiB||peptidyl-prolyl cis-trans isomerase, cyclophilin-type (NCBI)||183, 245|
|GSU0932||uraA||uracil permease (NCBI)||147, 164|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU0952||GSU0952||GGDEF domain protein (NCBI)||26, 183|
|GSU0997||mutM||formamidopyrimidine-DNA glycosylase (NCBI)||40, 164|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1067||GSU1067||conserved hypothetical protein (VIMSS)||156, 183|
|GSU1297||GSU1297||ISGsu2, transposase (VIMSS)||72, 164|
|GSU1298||GSU1298||methyl-accepting chemotaxis protein (VIMSS)||126, 183|
|GSU1443||GSU1443||sensor histidine kinase/response regulator (VIMSS)||183, 191|
|GSU1527||GSU1527||conserved hypothetical protein (VIMSS)||147, 183|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1563||GSU1563||hypothetical protein (VIMSS)||97, 164|
|GSU1772||ctpA-2||carboxy-terminal processing protease (NCBI)||25, 183|
|GSU1809||ftsH-2||cell division protein FtsH (NCBI)||183, 207|
|GSU1870||GSU1870||GGDEF domain protein (VIMSS)||183, 335|
|GSU2102||GSU2102||pyruvate formate-lyase-activating enzyme, putative (VIMSS)||126, 183|
|GSU2239||GSU2239||conserved hypothetical protein TIGR00255 (VIMSS)||47, 164|
|GSU2337||GSU2337||glycosyl transferase, group 20 family protein (NCBI)||47, 164|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2464||GSU2464||hypothetical protein (VIMSS)||156, 183|
|GSU2587||GSU2587||transcriptional regulator, MarR family (VIMSS)||140, 183|
|GSU2659||GSU2659||hypothetical protein (VIMSS)||183, 287|
|GSU2674||GSU2674||hypothetical protein (VIMSS)||164, 323|
|GSU2683||panE||2-dehydropantoate 2-reductase (VIMSS)||47, 164|
|GSU2736||GSU2736||hypothetical protein (VIMSS)||164, 327|
|GSU2759||GSU2759||potassium efflux system protein (VIMSS)||183, 287|
|GSU3000||GSU3000||cbiX protein (NCBI)||183, 265|
|GSU3049||GSU3049||hypothetical protein (VIMSS)||160, 164|
|GSU3108||rho||transcription termination factor Rho (NCBI)||183, 335|
|GSU3128||GSU3128||hypothetical protein (VIMSS)||95, 183|
|GSU3133||GSU3133||penicillin-binding protein, 1A family (VIMSS)||47, 164|
|GSU3147||mobB||molybdopterin-guanine dinucleotide biosynthesis protein MobB (NCBI)||164, 201|
|GSU3160||rluC||RNA pseudouridine synthase family protein (NCBI)||42, 183|
|GSU3203||GSU3203||outer membrane lipoprotein carrier protein LolA, putative (NCBI)||104, 183|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
|GSU3371||GSU3371||AP endonuclease, family 2 (NCBI)||47, 164|
|GSU3411||pcrA||ATP-dependent DNA helicase PcrA, putative (NCBI)||164, 281|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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