Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3049(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3049
|Gene||Common Name||Description||Module membership|
|GSU0073||GSU0073||outer membrane protein, putative (VIMSS)||160, 275|
|GSU0074||elbB||enhancing lycopene biosynthesis protein 2 (NCBI)||160, 279|
|GSU0135||hemB||delta-aminolevulinic acid dehydratase (NCBI)||91, 160|
|GSU0153||argG||argininosuccinate synthase (NCBI)||160, 258|
|GSU0155||GSU0155||hypothetical protein (VIMSS)||160, 289|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0451||tcrA||DNA-binding response regulator (NCBI)||160, 210|
|GSU0452||GSU0452||sensor histidine kinase (VIMSS)||4, 160|
|GSU0453||pfs||MTA/SAH nucleosidase (NCBI)||127, 160|
|GSU0454||GSU0454||conserved hypothetical protein (VIMSS)||99, 160|
|GSU0457||GSU0457||lipoprotein, putative (VIMSS)||125, 164|
|GSU0458||GSU0458||(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative (VIMSS)||125, 164|
|GSU0524||GSU0524||conserved hypothetical protein (VIMSS)||47, 164|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0577||recO||DNA repair protein RecO (NCBI)||160, 225|
|GSU0776||GSU0776||sigma-54 dependent DNA-binding response regulator (VIMSS)||160, 184|
|GSU0841||GSU0841||sigma-54 dependent DNA-binding response regulator (VIMSS)||164, 281|
|GSU0846||acnA||aconitate hydratase 1 (NCBI)||97, 160|
|GSU0854||GSU0854||membrane protein (NCBI)||65, 164|
|GSU0858||GSU0858||TonB-dependent receptor, putative (VIMSS)||9, 164|
|GSU0932||uraA||uracil permease (NCBI)||147, 164|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU0997||mutM||formamidopyrimidine-DNA glycosylase (NCBI)||40, 164|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1025||GSU1025||conserved domain protein (NCBI)||59, 160|
|GSU1026||GSU1026||conserved hypothetical protein (VIMSS)||63, 160|
|GSU1297||GSU1297||ISGsu2, transposase (VIMSS)||72, 164|
|GSU1316||GSU1316||response regulator (VIMSS)||160, 258|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1563||GSU1563||hypothetical protein (VIMSS)||97, 164|
|GSU1938||GSU1938||hypothetical protein (VIMSS)||60, 160|
|GSU2239||GSU2239||conserved hypothetical protein TIGR00255 (VIMSS)||47, 164|
|GSU2337||GSU2337||glycosyl transferase, group 20 family protein (NCBI)||47, 164|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2458||GSU2458||penicillin-binding protein, putative (NCBI)||160, 258|
|GSU2489||GSU2489||deoxyribonuclease, TatD family (VIMSS)||128, 160|
|GSU2492||GSU2492||sensory box histidine kinase (VIMSS)||99, 160|
|GSU2674||GSU2674||hypothetical protein (VIMSS)||164, 323|
|GSU2683||panE||2-dehydropantoate 2-reductase (VIMSS)||47, 164|
|GSU2736||GSU2736||hypothetical protein (VIMSS)||164, 327|
|GSU2859||tuf-1||translation elongation factor Tu (NCBI)||24, 160|
|GSU2871||tuf-2||translation elongation factor Tu (NCBI)||10, 160|
|GSU3049||GSU3049||hypothetical protein (VIMSS)||160, 164|
|GSU3112||GSU3112||cell division protein FtsK, putative (VIMSS)||128, 160|
|GSU3133||GSU3133||penicillin-binding protein, 1A family (VIMSS)||47, 164|
|GSU3147||mobB||molybdopterin-guanine dinucleotide biosynthesis protein MobB (NCBI)||164, 201|
|GSU3207||gpmA||phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI)||9, 160|
|GSU3209||GSU3209||iojap-related protein (VIMSS)||160, 335|
|GSU3210||nadD||nicotinate (nicotinamide) nucleotide adenylyltransferase (NCBI)||160, 214|
|GSU3211||proA||gamma-glutamyl phosphate reductase (NCBI)||160, 321|
|GSU3212||proB||glutamate 5-kinase (NCBI)||121, 160|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
|GSU3336||GSU3336||hypothetical protein (NCBI)||3, 160|
|GSU3371||GSU3371||AP endonuclease, family 2 (NCBI)||47, 164|
|GSU3373||sun||Sun protein (NCBI)||160, 336|
|GSU3374||rpe||ribulose-phosphate 3-epimerase (NCBI)||125, 160|
|GSU3411||pcrA||ATP-dependent DNA helicase PcrA, putative (NCBI)||164, 281|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
|GSU3434||nuoI-2||NADH dehydrogenase I, I subunit (NCBI)||160, 275|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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