Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG2150G(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG2150G
Module neighborhood information for VNG2150G
|Gene||Common Name||Description||Module membership|
|VNG0002G||yvrO||amino acid ABC transporter ATP-binding protein||124, 263|
|VNG0043H||hypothetical protein VNG0043H||45, 114|
|VNG0451G||phoU||hypothetical protein VNG0451G||6, 76, 124, 163, 174, 205, 226|
|VNG0452G||pstB2||phosphate ABC transporter ATP-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0453G||pstA2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0455G||pstC2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0457G||phoX||phosphate ABC transporter periplasmic phosphate-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0458G||prp1||phosphate regulatory protein-like protein||6, 76, 124, 163, 174, 205, 226|
|VNG0640G||nolD||NADH dehydrogenase/oxidoreductase-like protein||2, 3, 16, 19, 24, 29, 45, 123|
|VNG0641C||NADH dehydrogenase subunit J||19, 24, 29, 45, 199|
|VNG0642C||hypothetical protein VNG0642C||2, 24, 29, 45|
|VNG0646G||nuoL||F420H2:quinone oxidoreductase subunit L||29, 45|
|VNG1542G||sucD||hypothetical protein VNG1542G||33, 45, 67, 114, 124|
|VNG1543G||zim||CTAG modification methylase||114, 124, 174, 184|
|VNG1550G||cbiT||cobalamin biosynthesis protein||45, 67, 114, 227|
|VNG1551G||cbiL||cobalt-precorrin-2 C(20)-methyltransferase||45, 67, 114, 124, 227|
|VNG1553G||cbiF||cobalamin biosynthesis protein||45, 114, 227|
|VNG1554G||cbiG||cobalamin biosynthesis protein CbiG||45, 61, 67, 114, 124, 227|
|VNG1557G||cbiH||cobalamin biosynthesis protein||45, 61, 67, 114, 124, 174, 227|
|VNG1558H||hypothetical protein VNG1558H||45, 61, 67, 114, 124, 174, 227|
|VNG1559H||hypothetical protein VNG1559H||45, 114, 124, 174, 227|
|VNG1562H||hypothetical protein VNG1562H||45, 114, 124, 174, 205, 227|
|VNG1564H||hypothetical protein VNG1564H||114, 124, 174, 205, 226, 227|
|VNG1566G||cobN||hypothetical protein VNG1566G||61, 124|
|VNG1567G||cbiC||precorrin isomerase||61, 114, 124|
|VNG1568G||cbiJ||cobalt-precorrin-6Y C(5)-methyltransferase||61, 114, 124|
|VNG2099C||hypothetical protein VNG2099C||33, 45|
|VNG2138G||atpB||V-type ATP synthase subunit B||45, 67, 114, 124, 227|
|VNG2139G||atpA||V-type ATP synthase subunit A||23, 24, 33, 39, 45, 67, 114, 124, 227|
|VNG2140G||atpF||V-type ATP synthase subunit F||33, 39, 45, 67, 114, 124, 227|
|VNG2141G||atpC||V-type ATP synthase subunit C||23, 39, 45, 67, 114, 124, 227|
|VNG2142G||atpE||V-type ATP synthase subunit E||19, 24, 45, 67, 114, 227|
|VNG2143G||atpK||H+-transporting ATP synthase subunit K||2, 19, 23, 24, 45, 67, 75, 114, 124, 227|
|VNG2144G||atpI||H+-transporting ATP synthase subunit I||19, 23, 24, 45, 67, 75, 124, 227|
|VNG2146H||hypothetical protein VNG2146H||2, 16, 19, 24, 45, 67, 124, 227|
|VNG2150G||etfB||electron transfer flavoprotein subunit beta||45, 124|
|VNG2151G||etfA||electron transfer flavoprotein subunit alpha||33, 45, 61, 124|
|VNG2217G||pdhA2||pyruvate dehydrogenase alpha subunit||45, 61, 124|
|VNG2218G||pdhB||hypothetical protein VNG2218G||45, 61, 124, 174|
|VNG2219G||dsa||branched-chain alpha-keto acid dehydrogenase subunit E2||45, 61, 124, 174|
|VNG2220G||lpdA||LpdA||45, 61, 124, 174, 184|
|VNG2462G||dpa||signal recognition particle receptor||90, 124, 184|
|VNG2658G||rps12P||30S ribosomal protein S12P||23, 39, 40, 45, 98, 110, 137|
|VNG2662G||rpoC||DNA-directed RNA polymerase subunit A''||45, 98|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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