Organism : Halobacterium salinarum NRC-1 | Module List :
Functional Annotations (5)
|Precorrin isomerase||cog/ cog|
|cobalamin biosynthetic process||go/ biological_process|
|precorrin-8X methylmutase activity||go/ molecular_function|
|Porphyrin and chlorophyll metabolism||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for VNG1567G(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG1567G
Module neighborhood information for VNG1567G
|Gene||Common Name||Description||Module membership|
|VNG0002G||yvrO||amino acid ABC transporter ATP-binding protein||124, 263|
|VNG0043H||hypothetical protein VNG0043H||45, 114|
|VNG0451G||phoU||hypothetical protein VNG0451G||6, 76, 124, 163, 174, 205, 226|
|VNG0452G||pstB2||phosphate ABC transporter ATP-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0453G||pstA2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0455G||pstC2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0457G||phoX||phosphate ABC transporter periplasmic phosphate-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0458G||prp1||phosphate regulatory protein-like protein||6, 76, 124, 163, 174, 205, 226|
|VNG0540G||imp||hypothetical protein VNG0540G||114, 119|
|VNG0932C||hypothetical protein VNG0932C||25, 50, 61|
|VNG0967Gm||cheD||chemotaxis protein||61, 184|
|VNG0970G||cheC1||chemotaxis protein||61, 184|
|VNG0971G||cheA||hypothetical protein VNG0971G||61, 184|
|VNG0973G||cheB||hypothetical protein VNG0973G||55, 61, 184|
|VNG0974G||cheY||hypothetical protein VNG0974G||7, 55, 61, 184|
|VNG1413H||hypothetical protein VNG1413H||61|
|VNG1542G||sucD||hypothetical protein VNG1542G||33, 45, 67, 114, 124|
|VNG1543G||zim||CTAG modification methylase||114, 124, 174, 184|
|VNG1550G||cbiT||cobalamin biosynthesis protein||45, 67, 114, 227|
|VNG1551G||cbiL||cobalt-precorrin-2 C(20)-methyltransferase||45, 67, 114, 124, 227|
|VNG1553G||cbiF||cobalamin biosynthesis protein||45, 114, 227|
|VNG1554G||cbiG||cobalamin biosynthesis protein CbiG||45, 61, 67, 114, 124, 227|
|VNG1557G||cbiH||cobalamin biosynthesis protein||45, 61, 67, 114, 124, 174, 227|
|VNG1558H||hypothetical protein VNG1558H||45, 61, 67, 114, 124, 174, 227|
|VNG1559H||hypothetical protein VNG1559H||45, 114, 124, 174, 227|
|VNG1562H||hypothetical protein VNG1562H||45, 114, 124, 174, 205, 227|
|VNG1564H||hypothetical protein VNG1564H||114, 124, 174, 205, 226, 227|
|VNG1566G||cobN||hypothetical protein VNG1566G||61, 124|
|VNG1567G||cbiC||precorrin isomerase||61, 114, 124|
|VNG1568G||cbiJ||cobalt-precorrin-6Y C(5)-methyltransferase||61, 114, 124|
|VNG1632G||cbiQ||hypothetical protein VNG1632G||76, 114, 163, 174, 205, 226, 227|
|VNG1933G||ftsZ3||cell division protein||7, 25, 61, 227|
|VNG2138G||atpB||V-type ATP synthase subunit B||45, 67, 114, 124, 227|
|VNG2139G||atpA||V-type ATP synthase subunit A||23, 24, 33, 39, 45, 67, 114, 124, 227|
|VNG2140G||atpF||V-type ATP synthase subunit F||33, 39, 45, 67, 114, 124, 227|
|VNG2141G||atpC||V-type ATP synthase subunit C||23, 39, 45, 67, 114, 124, 227|
|VNG2142G||atpE||V-type ATP synthase subunit E||19, 24, 45, 67, 114, 227|
|VNG2143G||atpK||H+-transporting ATP synthase subunit K||2, 19, 23, 24, 45, 67, 75, 114, 124, 227|
|VNG2144G||atpI||H+-transporting ATP synthase subunit I||19, 23, 24, 45, 67, 75, 124, 227|
|VNG2146H||hypothetical protein VNG2146H||2, 16, 19, 24, 45, 67, 124, 227|
|VNG2150G||etfB||electron transfer flavoprotein subunit beta||45, 124|
|VNG2151G||etfA||electron transfer flavoprotein subunit alpha||33, 45, 61, 124|
|VNG2217G||pdhA2||pyruvate dehydrogenase alpha subunit||45, 61, 124|
|VNG2218G||pdhB||hypothetical protein VNG2218G||45, 61, 124, 174|
|VNG2219G||dsa||branched-chain alpha-keto acid dehydrogenase subunit E2||45, 61, 124, 174|
|VNG2220G||lpdA||LpdA||45, 61, 124, 174, 184|
|VNG2349G||dppA||hypothetical protein VNG2349G||61|
|VNG2400H||hypothetical protein VNG2400H||61, 184|
|VNG2430G||thrC1||threonine synthase||61, 77|
|VNG2462G||dpa||signal recognition particle receptor||90, 124, 184|
|VNG2499G||gcdH||glutaryl-CoA dehydrogenase||7, 24, 25, 50, 61, 78|
|VNG2603H||hypothetical protein VNG2603H||25, 61|
|VNG2604Gm||THI1||ribulose-1,5-biphosphate synthetase||25, 61|
|VNG2606G||thiD||hypothetical protein VNG2606G||25, 61|
|VNG6081G||crt_1||isopentenyl pyrophosphate isomerase||114|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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