Organism : Methanococcus maripaludis S2 | Module List :
Functional Annotations (6)
|Thiamine monophosphate synthase||cog/ cog|
|thiamine-phosphate diphosphorylase activity||go/ molecular_function|
|thiamine biosynthetic process||go/ biological_process|
|Thiamine metabolism||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for MMP1139(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1139
Module neighborhood information for MMP1139
|Gene||Common Name||Description||Module membership|
|MMP0003||korA||2-oxoglutarate ferredoxin oxidoreductase subunit alpha||27, 77|
|MMP0006||3-dehydroquinate synthase||27, 77|
|MMP0073||argG||argininosuccinate synthase||27, 120|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0135||thrC||threonine synthase||27, 77|
|MMP0136||leuD||3-isopropylmalate dehydratase small subunit||27, 77|
|MMP0160||ftsA-2||coenzyme F390 synthetase||27, 86|
|MMP0183||ribB||3,4-dihydroxy-2-butanone 4-phosphate synthase||8, 70|
|MMP0220||Sodium/proline symporter-related||70, 140|
|MMP0261||DNA directed RNA polymerase subunit L||27, 77|
|MMP0270||Fe-S cluster domain-containing protein||21, 70|
|MMP0272||ABC transporter ATPase||21, 70|
|MMP0273||comA||phosphosulfolactate synthase||21, 70|
|MMP0274||hypE||hydrogenase expression/formation protein HypE||67, 70|
|MMP0290||nac||nascent polypeptide-associated complex protein||8, 78|
|MMP0308||SirA family protein||7, 78|
|MMP0309||DsrE family protein||8, 78|
|MMP0345||hypothetical protein MMP0345||7, 70|
|MMP0355||hypothetical protein MMP0355||52, 78|
|MMP0359||glycosyl transferase family protein||7, 78|
|MMP0371||hypothetical protein MMP0371||8, 70|
|MMP0377||isoleucyl-tRNA synthetase-like protein||52, 78|
|MMP0381||3-isopropylmalate dehydratase small subunit||78, 80|
|MMP0382||putative ATPase RIL||8, 70, 78|
|MMP0385||pyrH||uridylate kinase||70, 78|
|MMP0391||aspC||aspartate aminotransferase||77, 78|
|MMP0396||eno||phosphopyruvate hydratase||77, 78|
|MMP0397||alaS||alanyl-tRNA synthetase||70, 78|
|MMP0398||hypothetical protein MMP0398||70, 80, 87|
|MMP0399||htpX||heat shock protein HtpX||70, 78|
|MMP0400||ehbQ||amino acid-binding ACT domain-containing protein||70, 78|
|MMP0402||hypothetical protein MMP0402||15, 70|
|MMP0410||prsA||ribose-phosphate pyrophosphokinase||52, 78|
|MMP0448||hypothetical protein MMP0448||4, 70|
|MMP0451||hypothetical protein MMP0451||1, 70|
|MMP0498||hypothetical protein MMP0498||52, 70|
|MMP0500||Iron-sulfur flavoprotein-like protein||70, 78|
|MMP0553||argF||ornithine carbamoyltransferase||27, 77|
|MMP0618||hypothetical protein MMP0618||21, 70|
|MMP0619||hypothetical protein MMP0619||21, 70|
|MMP0620||atwA||methyl coenzyme M reductase, component A2||21, 70|
|MMP0654||ilvC||ketol-acid reductoisomerase||27, 77|
|MMP0704||ParA type ATPase||8, 78, 112|
|MMP0816||seryl-tRNA synthetase-like protein||8, 70|
|MMP0879||serS||seryl-tRNA synthetase||27, 143|
|MMP0898||cellulose-binding protein||8, 70|
|MMP0899||ATP/GTP-binding motif-containing protein||70, 81|
|MMP0900||rhodanese domain-containing protein||70, 81|
|MMP0904||selD||selenophosphate synthetase||21, 70|
|MMP0949||tRNA CCA-pyrophosphorylase||4, 70|
|MMP0954||hypothetical protein MMP0954||21, 70|
|MMP0966||cobA||uroporphyrin-III C-methyltransferase||68, 70|
|MMP1018||cimA||(R)-citramalate synthase||7, 27|
|MMP1022||hypothetical protein MMP1022||21, 70|
|MMP1023||TetR family transcriptional regulator||8, 21, 78|
|MMP1089||polysaccharide biosynthesis protein||14, 70|
|MMP1093||coaD||phosphopantetheine adenylyltransferase||52, 70|
|MMP1101||acetylornithine aminotransferase||27, 120|
|MMP1129||ppiB||cyclophilin type peptidyl-prolyl cis-trans isomerase||40, 70, 78|
|MMP1137||Lrp/AsnC family transcriptional regulator||70, 78|
|MMP1138||thiM||hydroxyethylthiazole kinase||70, 78|
|MMP1139||thiE||thiamine-phosphate pyrophosphorylase||27, 70, 78|
|MMP1149||leuC||3-isopropylmalate dehydratase large subunit||27, 77|
|MMP1196||hypothetical protein MMP1196||27, 86|
|MMP1242||nadA||quinolinate synthetase||27, 81|
|MMP1310||purO||IMP cyclohydrolase||27, 77|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1497||hypothetical protein MMP1497||27, 77|
|MMP1498||hypothetical protein MMP1498||27, 77|
|MMP1510||gatA||aspartyl/glutamyl-tRNA amidotransferase subunit A||27, 77|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1589||carA||carbamoyl phosphate synthase small subunit||7, 78|
|MMP1592||trpS||tryptophanyl-tRNA synthetase||27, 143|
|MMP1593||hypothetical protein MMP1593||27, 77|
|MMP1701||amino acid-binding ACT domain-containing protein||27, 40|
|MMP1702||hom||homoserine dehydrogenase||27, 40|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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