Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1346(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1346
Module neighborhood information for MMP1346
|Gene||Common Name||Description||Module membership|
|Antisense_24||None||5, 49, 90|
|MMP0008||DP1||DNA polymerase II small subunit||22, 75, 142|
|MMP0017||hypothetical protein MMP0017||67, 142|
|MMP0019||hypothetical protein MMP0019||14, 104, 142|
|MMP0020||nickel responsive regulator||49, 123|
|MMP0021||hypothetical protein MMP0021||14, 142|
|MMP0035||hypothetical protein MMP0035||23, 67|
|MMP0036||tfe||transcription initiation factor E subunit alpha||49, 87, 92, 129|
|MMP0063||argB||acetylglutamate kinase||49, 151|
|MMP0084||hypothetical protein MMP0084||49, 106|
|MMP0108||ABC-type Iron(III)-binding periplasmic protein precursor||41, 67, 95|
|MMP0113||hypothetical protein MMP0113||23, 75, 142|
|MMP0119||birA||biotin--acetyl-CoA-carboxylase ligase||1, 75, 142|
|MMP0120||hypothetical protein MMP0120||55, 142|
|MMP0124||membrane-bound metal-dependent hydrolase||14, 67|
|MMP0203||hypothetical protein MMP0203||52, 67|
|MMP0204||hypothetical protein MMP0204||67, 99|
|MMP0225||gldA||glycerol dehydrogenase||117, 142|
|MMP0227||nrdD||anaerobic ribonucleoside-triphosphate reductase||15, 67|
|MMP0239||hypothetical protein MMP0239||1, 49, 75, 106|
|MMP0262||hypothetical protein MMP0262||52, 67|
|MMP0268||truA||tRNA pseudouridine synthase A||49, 51|
|MMP0274||hypE||hydrogenase expression/formation protein HypE||67, 70|
|MMP0277||TraB family protein||49, 90|
|MMP0279||mptG||beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein||49, 90|
|MMP0280||hisI||phosphoribosyl-AMP cyclohydrolase||67, 90|
|MMP0302||hypothetical protein MMP0302||49, 90|
|MMP0307||hypothetical protein MMP0307||33, 49, 153|
|MMP0322||rfcB||replication factor C large subunit||23, 67|
|MMP0324||hypothetical protein MMP0324||62, 142|
|MMP0341||pycA||pyruvate carboxylase subunit A||67, 86, 120|
|MMP0446||nitrogen fixation-like protein||52, 67|
|MMP0488||low molecular weight phosphotyrosine protein phosphatase||52, 67|
|MMP0489||hypothetical protein MMP0489||52, 67|
|MMP0544||MoaA/nifB/pqqE family protein||55, 142|
|MMP0545||putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein||55, 142|
|MMP0562||hypothetical protein MMP0562||49, 124|
|MMP0617||radB||DNA repair and recombination protein RadB||52, 67|
|MMP0643||hypothetical protein MMP0643||49, 65|
|MMP0648||rtcA||RNA 3'-terminal-phosphate cyclase||67, 146|
|MMP0682||hypothetical protein MMP0682||67, 92|
|MMP0725||putative integral membrane protein||49, 75, 90, 151|
|MMP0727||uvrB||excinuclease ABC subunit B||49, 142|
|MMP0728||uvrC||excinuclease ABC subunit C||90, 142|
|MMP0742||hypothetical protein MMP0742||23, 49|
|MMP0760||hypothetical protein MMP0760||22, 67, 92|
|MMP0811||hypothetical protein MMP0811||52, 67|
|MMP0902||hypothetical protein MMP0902||12, 49, 55|
|MMP0918||asnB||glutamine-hydrolyzing asparagine synthase||49, 115|
|MMP0986||thyA||thymidylate synthase||104, 142|
|MMP0993||XRE family transcriptional regulator||67, 144|
|MMP0994||hypothetical protein MMP0994||67, 144, 153|
|MMP1062||hypothetical protein MMP1062||142, 144|
|MMP1079||glycosyl transferase family protein||64, 67|
|MMP1080||group 1 glycosyl transferase||14, 142|
|MMP1120||ATPase-like ATP-binding protein||52, 67|
|MMP1123||radical SAM domain-containing protein||64, 67|
|MMP1141||ATP-dependent helicase||75, 142|
|MMP1218||hypothetical protein MMP1218||12, 46, 49|
|MMP1228||hypothetical protein MMP1228||4, 22, 142|
|MMP1235||moaE||molybdopterin biosynthesis MoaE||49, 55, 106, 117, 150|
|MMP1236||hypothetical protein MMP1236||22, 55, 117, 142, 152|
|MMP1264||hypothetical protein MMP1264||104, 142, 157|
|MMP1282||hypothetical protein MMP1282||49, 102, 106, 150|
|MMP1283||hypothetical protein MMP1283||49, 102, 150|
|MMP1290||GTP-binding protein||49, 115|
|MMP1343||hypothetical protein MMP1343||49, 151|
|MMP1345||undecaprenyl pyrophospahte synthetase-like protein||49, 111|
|MMP1346||basic helix-loop-helix dimerization domain-containing protein||49, 67, 142|
|MMP1372||manB||phosphomannomutase||49, 94, 152|
|MMP1398||dapE||diaminopimelate aminotransferase||22, 142|
|MMP1430||cation transporter||49, 115|
|MMP1431||2pgk||2-phosphoglycerate kinase||49, 51|
|MMP1485||moaB||molybdenum cofactor biosynthesis protein||104, 142|
|MMP1551||ffh||signal recognition particle protein Srp54||49, 55, 83|
|MMP1597||phosphatidylglycerophosphatase A||22, 142, 144|
|MMP1606||flavoprotein:DNA/pantothenate metabolism flavoprotein||1, 13, 49|
|MMP1607||hypothetical protein MMP1607||49, 55, 83|
|MMP1686||cbf5||H/ACA RNA-protein complex component Cbf5p||22, 67|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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