Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 171 - 180 of 229
Gene Target Differential Expression Distance Expression pvalue Type
Possible membrane protein
No -2 -0.07 0.916421 Antisense.TSS
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
No 39 -0.07 0.927163 CDS
transcriptional regulator, AfsR/DnrI/RedD family
No -20 0.48 0.182279 Internal.TSS
PPE family protein
No -98 0.22 0.723055 Internal.TSS
No 3 -0.06 0.905501 Primary.TSS
Probable response regulator
No -105 -0.01 0.996642 CDS
No 4 -0.19 0.771098 Primary.TSS
No 4 0.12 0.840913 Internal.TSS
POSSIBLE GLUTAREDOXIN PROTEIN
No 15 0.12 0.880861 Primary.TSS
Sulfur carrier protein adenylyltransferase ThiF
No 27 0.12 0.633876 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U