Rv0217c Esterase LipW

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv0217c lipW Esterase LipW CDS 259923 260831 - 909 302 FALSE

Rv0217c (Esterase LipW) is predicted to be co-regulated in modules bicluster_0210 with residual 0.48 and bicluster_0225 with residual 0.50.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.02 and 29.00 for bicluster_0210 and 0.00 and 0.00 for bicluster_0225 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 2 of 2
ChipSeq TF Differential Expression Distance Expression pvalue Type
Transcriptional regulator, PadR family
No -138 0.17 0.962221 Primary.TSS
Transcriptional regulator, TetR family
Repressed -5 -2.91 7.61e-31 Primary.TSS
Motif 1 Motif 2 Residual
bicluster_0210
e.value: 
0.022
Motif Bicluster: 
e.value: 
29
Motif Bicluster: 
0.48
bicluster_0225
e.value: 
0.000000000013
Motif Bicluster: 
e.value: 
0.000000000015
Motif Bicluster: 
0.50
Product (LegacyBRC) Product (RefSeq)
POSSIBLE ESTERASE LIPW esterase LipW
Operon # Operon
151
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Bisphenol degradation

35
Total items in this category:  

KEGG

Aminobenzoate degradation

73
Total items in this category:  

KEGG

Microbial metabolism in diverse environments

296
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15607358 NP_214731.1 Run
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.460000 1.17

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: