Rv0576 Transcriptional regulator, ArsR family

Rv0576 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0464 with residual 0.52 and bicluster_0530 with residual 0.56.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.03 and 2.20 for bicluster_0464 and 0.00 and 0.46 for bicluster_0530 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 21 - 30 of 34
Gene Target Differential Expression Distance Expression pvalue Type
Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
No -28 -0.27 0.343551 CDS
Transcriptional regulator, AsnC family
No -97 -0.11 0.781371 Internal.TSS
Transcriptional regulator, AsnC family
No -139 -0.11 0.781371 CDS
WhiB-like transcription regulator
No 31 0.37 0.339648 Primary.TSS
Zn-dependent hydrolases, including glyoxylases
No -6 -0.46 0.0224294 CDS
PPE family protein
No 62 0.04 0.926887 Antisense.TSS
PPE family protein
No -46 0.04 0.926887 Internal.TSS
MCE-family protein Mce1A
No -116 -0.24 0.292482 Primary.TSS
No -116 0.42 0.171907 Internal.TSS
No -120 0.13 0.833776 Primary.TSS
not assigned to any KEGG Pathway.
GO:0003700

sequence-specific DNA binding transcription factor activity

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
molecular_function
17
Total items in this category:  
GO:0005622

intracellular

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
cellular_component
65
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.46 U
D3I 3 3 3.83 10.53 I
D3U 3 3 3.83 10.60 U
D5I 9 5 6.00 11.64 I
D5U 17 5 6.00 12.51 U
D7I 18 7 8.14 9.87 I
D7U 19 7 8.14 10.73 U
D14I 4 14 15.63 4.37 I
D14U 4 14 15.63 8.27 U
D17I 3 17 19.15 2.28 I
D17U 3 17 19.15 7.39 U
D21I 4 21 23.23 5.34 I
D21U 4 21 23.23 8.01 U
D24I 3 24 26.60 I
D24U 3 24 26.60 6.90 U
D28I 4 28 30.61 2.16 I
D28U 4 28 30.61 6.89 U