Rv0578c PE-PGRS FAMILY PROTEIN

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv0578c PE_PGRS7 PE-PGRS FAMILY PROTEIN CDS 671996 675916 - 3 921 1 306 FALSE

Rv0578c (PE-PGRS FAMILY PROTEIN) is predicted to be co-regulated in modules bicluster_0194 with residual 0.52 and bicluster_0216 with residual 0.56.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.17 for bicluster_0194 and 0.00 and 0.00 for bicluster_0216 respectively.

These modules are enriched for following go terms: RNA-3'-phosphate cyclase activity RNA-3'-phosphate cyclase activity.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Last update: 10/16/2017 - 05:58
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-14888 MT0607 171
Product (LegacyBRC) Product (RefSeq)
PE-PGRS FAMILY PROTEIN PE-PGRS family protein
Operon # Operon
390
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
57116755 YP_177739.1 Run
No TFOE experiment results were found
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.450000 0.95

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: