Rv0678

Rv0678 () is predicted to be co-regulated in modules bicluster_0300 with residual 0.49 and bicluster_0397 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.40 for bicluster_0300 and 0.00 and 0.00 for bicluster_0397 respectively.

These modules are enriched for following go terms: tricarboxylic acid cycle enzyme complex, acid-thiol ligase activity, ligase activity, forming carbon-sulfur b... nitrogen compound metabolic process, carbon-oxygen lyase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 71 - 80 of 268
Gene Target Differential Expression Distance Expression pvalue Type
Large-conductance mechanosensitive channel
No -19 0.39 0.269892 CDS
Molybdopterin biosynthesis protein MoeA
No -58 -0.14 0.373556 Internal.TSS
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)
Repressed 25 -0.65 0.000625086 Antisense.TSS
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)
Repressed 16 -0.65 0.000625086 CDS
No 25 -0.14 0.526628 Primary.TSS
Cell wall-binding protein
No 68 0.26 0.183679 Primary.TSS
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
No -39 0.77 0.0705436 Primary.TSS
DNA-binding response regulator TrcR
Repressed 63 -2.18 0.00000000000000219 Primary.TSS
PPE family protein
No 5 0.01 0.978908 CDS
No -130 0.05 0.899496 Primary.TSS
not assigned to any KEGG Pathway.
GO:0006355

regulation of transcription, DNA-dependent

regulation of transcription, DNA-dependent

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.
GO Category: 
biological_process
15
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.19 U
D3I 3 3 3.83 13.23 I
D3U 3 3 3.83 12.65 U
D5I 9 5 6.00 9.29 I
D5U 17 5 6.00 10.09 U
D7I 18 7 8.14 10.70 I
D7U 19 7 8.14 13.18 U
D14I 4 14 15.63 8.46 I
D14U 4 14 15.63 13.79 U
D17I 3 17 19.15 4.72 I
D17U 3 17 19.15 14.16 U
D21I 4 21 23.23 4.45 I
D21U 4 21 23.23 13.42 U
D24I 3 24 26.60 3.27 I
D24U 3 24 26.60 13.79 U
D28I 4 28 30.61 3.93 I
D28U 4 28 30.61 12.89 U