Rv0678

Rv0678 () is predicted to be co-regulated in modules bicluster_0300 with residual 0.49 and bicluster_0397 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.40 for bicluster_0300 and 0.00 and 0.00 for bicluster_0397 respectively.

These modules are enriched for following go terms: tricarboxylic acid cycle enzyme complex, acid-thiol ligase activity, ligase activity, forming carbon-sulfur b... nitrogen compound metabolic process, carbon-oxygen lyase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 61 - 70 of 268
Gene Target Differential Expression Distance Expression pvalue Type
Phosphate transport system regulatory protein PhoU
No -12 -0.4 0.00659292 Primary.TSS
Transcriptional regulator, TetR family
No -42 0.21 0.593585 Primary.TSS
PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN
Induced -67 1.25 0.000350548 Internal.TSS
Adenylyl cyclase class-3/4/guanylyl cyclase
No 59 0.47 0.205074 Primary.TSS
Cyclohexanone monooxygenase (EC 1.14.13.22)
No -3 0.59 0.261788 Primary.TSS
Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
No -104 -0.05 0.884032 CDS
Phage peptidoglycan binding endopeptidase
No -144 0.03 0.935185 Primary.TSS
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
No -83 0.36 0.154792 Primary.TSS
Putative secreted protein
Induced 4 1.1 0.0000000996 CDS
Large-conductance mechanosensitive channel
No 29 0.39 0.269892 Internal.TSS
not assigned to any KEGG Pathway.
GO:0006355

regulation of transcription, DNA-dependent

regulation of transcription, DNA-dependent

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.
GO Category: 
biological_process
15
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.19 U
D3I 3 3 3.83 13.23 I
D3U 3 3 3.83 12.65 U
D5I 9 5 6.00 9.29 I
D5U 17 5 6.00 10.09 U
D7I 18 7 8.14 10.70 I
D7U 19 7 8.14 13.18 U
D14I 4 14 15.63 8.46 I
D14U 4 14 15.63 13.79 U
D17I 3 17 19.15 4.72 I
D17U 3 17 19.15 14.16 U
D21I 4 21 23.23 4.45 I
D21U 4 21 23.23 13.42 U
D24I 3 24 26.60 3.27 I
D24U 3 24 26.60 13.79 U
D28I 4 28 30.61 3.93 I
D28U 4 28 30.61 12.89 U