Rv0792c PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase

Summary

Product Feature Type Start End Strand Length AA Length is TF
Rv0792c PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase CDS 885837 886646 - 810 269 FALSE

Rv0792c (PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase) is predicted to be co-regulated in modules bicluster_0378 with residual 0.42 and bicluster_0492 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.48 and 14.00 for bicluster_0378 and 4,900.00 and 7,700.00 for bicluster_0492 respectively.

These modules are enriched for following go terms: transporter activity .

This gene is found to be for growth on cholesterol.

Mutant available?:

Product (LegacyBRC) Product (RefSeq)
PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [PROBABLY GNTR-FAMILY] GntR family transcriptional regulator
Operon # Operon
522 - - -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15607932 NP_215307.1 Run
GO:0052572

response to host immune response

response to host immune response

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
GO Category: 
biological_process
62
Total items in this category:  
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
0.180000 1.05

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated: 0.0244855
p-value INH: 0.374537
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.46 U
D3I 3 3 3.83 12.60 I
D3U 3 3 3.83 12.42 U
D5I 9 5 6.00 13.46 I
D5U 17 5 6.00 13.75 U
D7I 18 7 8.14 13.65 I
D7U 19 7 8.14 13.91 U
D14I 4 14 15.63 10.51 I
D14U 4 14 15.63 12.08 U
D17I 3 17 19.15 9.23 I
D17U 3 17 19.15 12.01 U
D21I 4 21 23.23 8.69 I
D21U 4 21 23.23 11.91 U
D24I 3 24 26.60 7.84 I
D24U 3 24 26.60 11.86 U
D28I 4 28 30.61 7.34 I
D28U 4 28 30.61 12.12 U