Rv1404 Transcriptional regulator, MarR family

Rv1404 (Transcriptional regulator, MarR family) is predicted to be co-regulated in modules bicluster_0434 with residual 0.58 and bicluster_0487 with residual 0.48.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0434 and 0.00 and 3.50 for bicluster_0487 respectively.

These modules are enriched for following go terms: cellular macromolecule catabolic process, cellular protein metabolic process, coenzyme biosynthetic process, cofactor biosynthetic process .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 48
Gene Target Differential Expression Distance Expression pvalue Type
Inner membrane component of tripartite multidrug resistance system
No 38 -0.05 0.932247 Antisense.TSS
Inner membrane component of tripartite multidrug resistance system
No 1 -0.05 0.932247 Antisense.TSS
PUTATIVE TRANSPOSASE (FRAGMENT)
No -104 0.29 0.698153 CDS
Fatty acid desaturase occurring in virulence cluster
No -4 -0.39 0.61831 Primary.TSS
No -98 0.32 0.600603 CDS
No 14 -0.56 0.0311341 Primary.TSS
Cytochrome P450 130
No 43 0.43 0.264647 CDS
ATP synthase B chain (EC 3.6.3.14)
No -34 0.08 0.922597 CDS
Cysteine synthase B (EC 2.5.1.47)
No 60 -0.12 0.776604 Internal.TSS
No 40 -0.23 0.839802 CDS
not assigned to any KEGG Pathway.
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.35 U
D3I 3 3 3.83 12.55 I
D3U 3 3 3.83 12.22 U
D5I 9 5 6.00 11.38 I
D5U 17 5 6.00 11.81 U
D7I 18 7 8.14 11.25 I
D7U 19 7 8.14 12.46 U
D14I 4 14 15.63 6.98 I
D14U 4 14 15.63 11.85 U
D17I 3 17 19.15 3.95 I
D17U 3 17 19.15 11.53 U
D21I 4 21 23.23 9.54 I
D21U 4 21 23.23 11.65 U
D24I 3 24 26.60 2.50 I
D24U 3 24 26.60 11.47 U
D28I 4 28 30.61 4.03 I
D28U 4 28 30.61 11.43 U