Rv1423

Rv1423 () is predicted to be co-regulated in modules bicluster_0266 with residual 0.50 and bicluster_0329 with residual 0.54.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 41.00 and 620.00 for bicluster_0266 and 0.00 and 1.10 for bicluster_0329 respectively.

These modules are enriched for following go terms: inositol metabolic process, inositol biosynthetic process, polyol biosynthetic process, acyl-CoA dehydrogenase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 61 - 70 of 119
Gene Target Differential Expression Distance Expression pvalue Type
Putative ATP-dependent exoDNAse
No -144 -0.42 0.30046 CDS
Low molecular weight antigen MTB12 precursor
Repressed 23 -1.14 0.0000000000799 Primary.TSS
Homocysteine S-methyltransferase (EC 2.1.1.10)
No -99 0.29 0.451972 CDS
POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN
No -119 0.03 0.963884 Antisense.TSS
No -133 0.51 0.216135 Internal.TSS
Glutamine-transport transmembrane protein ABC transporter
No -133 -0.07 0.923246 Primary.TSS
Large protein containing transglutaminase-like domain
No -113 0.26 0.488113 CDS
Protein-export membrane protein SecF (TC 3.A.5.1.1)
No -126 -0.38 0.00696388 Internal.TSS
No -42 0.11 0.874323 Primary.TSS
No 20 0.34 0.29859 CDS
not assigned to any KEGG Pathway.
GO:0005618

cell wall

cell wall

Details: 
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.
GO Category: 
cellular_component
320
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.09 U
D3I 3 3 3.83 13.09 I
D3U 3 3 3.83 12.72 U
D5I 9 5 6.00 10.77 I
D5U 17 5 6.00 10.75 U
D7I 18 7 8.14 12.07 I
D7U 19 7 8.14 12.16 U
D14I 4 14 15.63 4.41 I
D14U 4 14 15.63 8.82 U
D17I 3 17 19.15 2.26 I
D17U 3 17 19.15 8.56 U
D21I 4 21 23.23 1.73 I
D21U 4 21 23.23 7.24 U
D24I 3 24 26.60 1.96 I
D24U 3 24 26.60 7.47 U
D28I 4 28 30.61 I
D28U 4 28 30.61 6.14 U