Rv1423

Rv1423 () is predicted to be co-regulated in modules bicluster_0266 with residual 0.50 and bicluster_0329 with residual 0.54.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 41.00 and 620.00 for bicluster_0266 and 0.00 and 1.10 for bicluster_0329 respectively.

These modules are enriched for following go terms: inositol metabolic process, inositol biosynthetic process, polyol biosynthetic process, acyl-CoA dehydrogenase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 81 - 90 of 119
Gene Target Differential Expression Distance Expression pvalue Type
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22
No -58 0.13 0.818175 Internal.TSS
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD22
No 37 0.13 0.818175 Antisense.TSS
D-alanine--D-alanine ligase (EC 6.3.2.4)
No -47 -0.29 0.0382292 Primary.TSS
Galactoside O-acetyltransferase (EC 2.3.1.18)
No -85 0.14 0.578301 Primary.TSS
putative oxidoreductase
No -111 0.05 0.975221 Primary.TSS
Mobile element protein
No -51 -0.27 0.729544 CDS
Mobile element protein
No -57 -0.27 0.729544 Antisense.TSS
Hydrolase, alpha/beta fold family
No 46 0.07 0.689947 Primary.TSS
Lon-like protease with PDZ domain
No -76 -0.51 0.279356 Primary.TSS
Collagen alpha 1(I) chain precursor
No -95 0.28 0.510945 Primary.TSS
not assigned to any KEGG Pathway.
GO:0005618

cell wall

cell wall

Details: 
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.
GO Category: 
cellular_component
320
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.09 U
D3I 3 3 3.83 13.09 I
D3U 3 3 3.83 12.72 U
D5I 9 5 6.00 10.77 I
D5U 17 5 6.00 10.75 U
D7I 18 7 8.14 12.07 I
D7U 19 7 8.14 12.16 U
D14I 4 14 15.63 4.41 I
D14U 4 14 15.63 8.82 U
D17I 3 17 19.15 2.26 I
D17U 3 17 19.15 8.56 U
D21I 4 21 23.23 1.73 I
D21U 4 21 23.23 7.24 U
D24I 3 24 26.60 1.96 I
D24U 3 24 26.60 7.47 U
D28I 4 28 30.61 I
D28U 4 28 30.61 6.14 U