Rv1530 Alcohol dehydrogenase (EC 1.1.1.1)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv1530 adh Alcohol dehydrogenase (EC 1.1.1.1) CDS 1731373 1732476 + 1 104 367 FALSE

Rv1530 (Alcohol dehydrogenase (EC 1.1.1.1)) is predicted to be co-regulated in modules bicluster_0134 with residual 0.52 and bicluster_0536 with residual 0.53.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 9.50 for bicluster_0134 and 0.60 and 130.00 for bicluster_0536 respectively.

These modules are enriched for following go terms: oxidoreductase activity, acting on other... .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Last update: 10/16/2017 - 11:39
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-19854 MT1581 1599
Product (LegacyBRC) Product (RefSeq)
Probable alcohol dehydrogenase adh alcohol dehydrogenase adh
Operon # Operon
1018 -
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Glycolysis / Gluconeogenesis

35
Total items in this category:  

KEGG

Fatty acid metabolism

51
Total items in this category:  

KEGG

Tyrosine metabolism

41
Total items in this category:  

KEGG

Chloroalkane and chloroalkene degradation

13
Total items in this category:  

KEGG

Naphthalene degradation

40
Total items in this category:  

KEGG

Metabolic pathways

601
Total items in this category:  

KEGG

Biosynthesis of secondary metabolites

326
Total items in this category:  

KEGG

Microbial metabolism in diverse environments

296
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15608668 NP_216046.1 Run
No TFOE experiment results were found
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.560000 1.10

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: