Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Transcriptional regulator, ArsR family
No -49 0.44 0.276076 CDS
PPE family protein
No 18 0.06 0.916087 CDS
Possible membrane protein
No 20 0.16 0.594644 Primary.TSS
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -63 0.08 0.711776 Internal.TSS
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -30 0.08 0.711776 CDS
Programmed cell death toxin YdcE
No 39 0.24 0.585261 Primary.TSS
No results were found NA 39 Internal.TSS
\Transcriptional regulator, XRE family\\\""
No -66 0.05 0.900162 Primary.TSS
\DNA binding domain protein, excisionase family\\\""
No -51 0.15 0.633172 Primary.TSS
Phosphoserine phosphatase (EC 3.1.3.3)
No -12 0.18 0.333894 Primary.TSS
not assigned to any KEGG Pathway.
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
BioProject Accession GEO Series References Repository Sample Method Sample Type
PRJNA254351 GSM1426761 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426762 GSE59086 25232098 GEO Tiling Array RNA

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U