Rv2261c Apolipoprotein N-acyltransferase (EC 2.3.1.-)

Summary
Product Feature Type Start End Strand Length AA Length is TF
Rv2261c Apolipoprotein N-acyltransferase (EC 2.3.1.-) CDS 2534042 2534464 - 423 140 FALSE

Rv2261c (Apolipoprotein N-acyltransferase (EC 2.3.1.-)) is predicted to be co-regulated in modules bicluster_0506 with residual 0.55 and bicluster_0590 with residual 0.54.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.02 and 2.50 for bicluster_0506 and 0.00 and 0.00 for bicluster_0590 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

BASS Score Re-Annotated Start Tuberculist Annotated Start
-0.437 2534485 2534464
Last update: 10/16/2017 - 12:06
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-18504 MT2322 2415
Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 1 of 1
ChipSeq TF Differential Expression Distance Expression pvalue Type
No results were found
Motif 1 Motif 2 Residual
bicluster_0506
e.value: 
0.018
Motif Bicluster: 
e.value: 
2.5
Motif Bicluster: 
0.55
bicluster_0590
e.value: 
0.000087
Motif Bicluster: 
e.value: 
0.0026
Motif Bicluster: 
0.54
Product (LegacyBRC) Product (RefSeq)
Rv2261c
Operon # Operon
1485 -
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15609398 NP_216777.1 Run
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.050000 0.46

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: