Rv2324 Transcriptional regulator, AsnC family

Rv2324 (Transcriptional regulator, AsnC family) is predicted to be co-regulated in modules bicluster_0346 with residual 0.51 and bicluster_0420 with residual 0.47.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.14 for bicluster_0346 and 0.00 and 0.00 for bicluster_0420 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 101 - 110 of 128
Gene Target Differential Expression Distance Expression pvalue Type
DNA-binding response regulator mtrA
No 39 -0.47 0.124339 Internal.TSS
No 4 0.1 0.968616 Primary.TSS
Enoyl-CoA hydratase
No -13 0.05 0.95867 Primary.TSS
Lipoprotein LpqD
No -69 -0.46 0.416852 Primary.TSS
RNA polymerase sigma-70 factor
No 60 0.41 0.303113 CDS
Phosphoglucosamine mutase (EC 5.4.2.10)
No 66 -0.02 0.978693 Primary.TSS
PROBABLE CONSERVED MEMBRANE PROTEIN
No -128 -0.05 0.965983 CDS
No -13 -0.13 0.935239 CDS
PE-PGRS virulence associated protein
No -116 0.03 0.988013 Primary.TSS
Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids
No 44 0.03 0.991204 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.79 U
D3I 3 3 3.83 12.85 I
D3U 3 3 3.83 13.00 U
D5I 9 5 6.00 13.44 I
D5U 17 5 6.00 14.02 U
D7I 18 7 8.14 11.63 I
D7U 19 7 8.14 12.96 U
D14I 4 14 15.63 5.04 I
D14U 4 14 15.63 12.17 U
D17I 3 17 19.15 3.15 I
D17U 3 17 19.15 11.85 U
D21I 4 21 23.23 7.99 I
D21U 4 21 23.23 12.32 U
D24I 3 24 26.60 I
D24U 3 24 26.60 12.06 U
D28I 4 28 30.61 4.59 I
D28U 4 28 30.61 12.59 U