Rv2642 Arsenical resistance operon repressor

Rv2642 (Arsenical resistance operon repressor) is predicted to be co-regulated in modules bicluster_0008 with residual 0.62 and bicluster_0043 with residual 0.47.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0008 and 0.00 and 0.01 for bicluster_0043 respectively.

These modules are enriched for following go terms: nucleic acid binding transcription facto..., sequence-specific DNA binding transcript....

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 15 of 15
Gene Target Differential Expression Distance Expression pvalue Type
Type VII secretion integral membrane protein EccD
No -63 -0.05 0.76108 Primary.TSS
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
No -4 -0.35 0.586101 CDS
No 12 0.18 0.710615 CDS
No -20 0.19 0.640253 Primary.TSS
Aspartate 1-decarboxylase (EC 4.1.1.11)
No 39 0.03 0.956826 CDS
not assigned to any KEGG Pathway.
GO:0003700

sequence-specific DNA binding transcription factor activity

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
molecular_function
17
Total items in this category:  
GO:0005622

intracellular

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
cellular_component
65
Total items in this category:  
GO:0046688

response to copper ion

response to copper ion

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
GO Category: 
biological_process
5
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.02 U
D3I 3 3 3.83 13.30 I
D3U 3 3 3.83 13.11 U
D5I 9 5 6.00 12.25 I
D5U 17 5 6.00 11.81 U
D7I 18 7 8.14 14.05 I
D7U 19 7 8.14 12.69 U
D14I 4 14 15.63 13.84 I
D14U 4 14 15.63 11.45 U
D17I 3 17 19.15 14.68 I
D17U 3 17 19.15 11.03 U
D21I 4 21 23.23 14.81 I
D21U 4 21 23.23 11.30 U
D24I 3 24 26.60 15.83 I
D24U 3 24 26.60 10.78 U
D28I 4 28 30.61 15.57 I
D28U 4 28 30.61 10.87 U