Rv3411c Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3411c guaB2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) CDS 3829930 3831519 - 1 590 529 FALSE

Rv3411c (Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)) is predicted to be co-regulated in modules bicluster_0289 with residual 0.53 and bicluster_0460 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.03 for bicluster_0289 and 55.00 and 160.00 for bicluster_0460 respectively.

These modules are enriched for following go terms: oxidoreductase activity, acting on the C..., oxidoreductase activity, acting on CH-OH... branched-chain amino acid metabolic proc..., translation, acetolactate synthase activity, anion transmembrane-transporting ATPase ..., structural constituent of ribosome.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 1 of 1
ChipSeq TF Differential Expression Distance Expression pvalue Type
No results were found
Motif 1 Motif 2 Residual
bicluster_0289
e.value: 
0.000000000044
Motif Bicluster: 
e.value: 
0.031
Motif Bicluster: 
0.53
bicluster_0460
e.value: 
55
Motif Bicluster: 
e.value: 
160
Motif Bicluster: 
0.59
Product (LegacyBRC) Product (RefSeq)
Inosine-5&apos-monophosphate dehydrogenase inosine 5'-monophosphate dehydrogenase
Operon # Operon
2231 -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

IMP dehydrogenase Drug metabolism - other enzymes, Purine metabolism
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Purine metabolism

65
Total items in this category:  

KEGG

Metabolic pathways

601
Total items in this category:  

KEGG

Biosynthesis of secondary metabolites

326
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610547 NP_217928.1 Run
GO:0003938

IMP dehydrogenase activity

IMP dehydrogenase activity

Details: 
Catalysis of the reaction: inosine 5'-phosphate + NAD+ + H2O = xanthosine 5'-phosphate + NADH + H+.
GO Category: 
molecular_function
4
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
GO:0040007

growth

growth

Details: 
The increase in size or mass of an entire organism, a part of an organism or a cell.
GO Category: 
biological_process
621
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
NA NA

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: