Rv3573c Acyl-CoA dehydrogenase (EC 1.3.99.-)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3573c fadE34 Acyl-CoA dehydrogenase (EC 1.3.99.-) CDS 4014077 4016212 - 2 136 711 FALSE

Rv3573c (Acyl-CoA dehydrogenase (EC 1.3.99.-)) is predicted to be co-regulated in modules bicluster_0200 with residual 0.45 and bicluster_0291 with residual 0.49.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.16 for bicluster_0200 and 0.00 and 3.30 for bicluster_0291 respectively.

These modules are enriched for following go terms: coenzyme binding, oxidoreductase activity acyl-CoA dehydrogenase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 5 of 5
ChipSeq TF Differential Expression Distance Expression pvalue Type
Transcriptional regulator, TetR family
No 66 -0.09 0.944252 CDS
Histone protein Lsr2
No 67 -0.01 0.990706 CDS
Transcriptional regulator, MarR family
No 37 -0.08 0.869939 CDS
Transcriptional regulatory protein
No 64 0.09 0.619383 CDS
Transcriptional regulator, ArsR family
No 68 -0.33 0.00219778 CDS
Motif 1 Motif 2 Residual
bicluster_0200
e.value: 
8.3e-28
Motif Bicluster: 
e.value: 
0.16
Motif Bicluster: 
0.45
bicluster_0291
e.value: 
0.000000073
Motif Bicluster: 
e.value: 
3.3
Motif Bicluster: 
0.49
Product (LegacyBRC) Product (RefSeq)
PROBABLE ACYL-CoA DEHYDROGENASE FADE34 acyl-CoA dehydrogenase FADE34
Operon # Operon
2327
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610709 NP_218090.1 Run
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.010000 0.25

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: