Rv3593 Beta-lactamase (EC 188.8.131.52)
This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.16 for bicluster_0145 and 930.00 and 3,100.00 for bicluster_0252 respectively.
These modules are enriched for following go terms: riboflavin metabolic process, riboflavin biosynthetic process, flavin-containing compound metabolic pro..., flavin-containing compound biosynthetic ... regulation of cell shape, regulation of anatomical structure morph..., regulation of cell morphogenesis, regulation of developmental process, cell morphogenesis, anatomical structure morphogenesis, developmental process, cellular component morphogenesis, single-organism developmental process, anatomical structure development, cellular developmental process, regulation of cellular component organiz..., cellular component organization.
This gene is found to be for growth on cholesterol.
|BASS Score||New Primary UTR||Primary TSS||Re-Annotated Start||Tuberculist Annotated Start|
|ChipSeq TF||Differential Expression||Distance||Expression||pvalue||Type|
|Motif 1||Motif 2||Residual|
|Product (LegacyBRC)||Product (RefSeq)|
|PROBABLE CONSERVED LIPOPROTEIN LPQF||lipoprotein LpqF|
|BioCyc Gene Page||Cellular Overview Map|
|No results were found|
|t-test p-value||Cholesterol/Glycerol Ratio|
How essentiality calculations were done?
The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.
reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.