Rv3794 Probable arabinosyltransferase A (EC 2.4.2.-)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3794 embA Probable arabinosyltransferase A (EC 2.4.2.-) CDS 4243233 4246517 + 3 285 1 094 FALSE

Rv3794 (Probable arabinosyltransferase A (EC 2.4.2.-)) is predicted to be co-regulated in modules bicluster_0065 with residual 0.72 and bicluster_0575 with residual 0.62.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 7.10 and 1,500.00 for bicluster_0065 and 56.00 and 5,900.00 for bicluster_0575 respectively.

These modules are enriched for following go terms: UDP-glycosyltransferase activity .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 2 of 2
ChipSeq TF Differential Expression Distance Expression pvalue Type
Transcriptional regulator, AsnC family
No -11 -0.19 0.861194 Primary.TSS
TetR/ACRR family transcriptional regulator
Repressed 30 -0.91 0.00000972 Primary.TSS
Motif 1 Motif 2 Residual
bicluster_0065
e.value: 
7.1
Motif Bicluster: 
e.value: 
1500
Motif Bicluster: 
0.72
bicluster_0575
e.value: 
56
Motif Bicluster: 
e.value: 
5900
Motif Bicluster: 
0.62
Product (LegacyBRC) Product (RefSeq)
Probable arabinosyltransferase A integral membrane indolylacetylinositol arabinosyltransferase EMBA (arabinosylindolylacetylinositol synthase)
Operon # Operon
2482 -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Pentosyltransferases. Butirosin and neomycin biosynthesis, Purine metabolism
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610930 NP_218311.1 Run
GO:0005576

extracellular region

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
cellular_component
272
Total items in this category:  
GO:0005829

cytosol

cytosol

Details: 
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
GO Category: 
cellular_component
371
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
GO:0005887

integral to plasma membrane

integral to plasma membrane

Details: 
Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
GO Category: 
cellular_component
101
Total items in this category:  
GO:0016763

transferase activity, transferring pentosyl groups

transferase activity, transferring pentosyl groups

Details: 
Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
GO Category: 
molecular_function
3
Total items in this category:  
GO:0040007

growth

growth

Details: 
The increase in size or mass of an entire organism, a part of an organism or a cell.
GO Category: 
biological_process
621
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.320000 47.52

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: