Rv3804c Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3804c fbpA Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-) CDS 4265642 4266658 - 1 017 338 FALSE

Rv3804c (Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)) is predicted to be co-regulated in modules bicluster_0327 with residual 0.42 and bicluster_0448 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 440.00 and 980.00 for bicluster_0327 and 2.80 and 7.00 for bicluster_0448 respectively.

These modules are enriched for following go terms: monocarboxylic acid binding, protein tyrosine kinase activity, sulfur compound binding, protein kinase activity, amide binding .

This gene is found to be non-essential for growth on cholesterol.

Mutant available?:

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Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 8 of 8
ChipSeq TF Differential Expression Distance Expression pvalue Type
DNA-binding response regulator
No -85 -0.33 0.334776 Primary.TSS
Transcriptional regulator, ArsR family
No -80 -0.43 0.119828 Primary.TSS
transcriptional regulator, ArsR family
No -73 -0.05 0.868116 Primary.TSS
Transcriptional regulator, PadR family
No -60 -0.28 0.962221 Primary.TSS
Transcriptional regulator, TetR family
No -60 0.17 0.883757 Primary.TSS
Transcriptional regulator, ArsR family
No -58 -0.11 0.713137 Primary.TSS
Transcriptional regulator, TetR family
No -130 0.03 0.966053 Primary.TSS
No -110 -0.18 0.756907 Primary.TSS
Motif 1 Motif 2 Residual
bicluster_0327
e.value: 
440
Motif Bicluster: 
e.value: 
980
Motif Bicluster: 
0.42
bicluster_0448
e.value: 
2.8
Motif Bicluster: 
e.value: 
7
Motif Bicluster: 
0.58
Product (LegacyBRC) Product (RefSeq)
Antigen 85-A secreted antigen 85-A FBPA (Mycolyl transferase 85A) (fibronectin-binding protein A) (antigen 85 complex A)
Operon # Operon
2489 Rv3804c
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610940 NP_218321.1 Run
GO:0005515

protein binding

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
molecular_function
135
Total items in this category:  
GO:0005576

extracellular region

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
cellular_component
272
Total items in this category:  
GO:0005618

cell wall

cell wall

Details: 
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.
GO Category: 
cellular_component
320
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

transferase activity, transferring acyl groups other than amino-acyl groups

Details: 
Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
GO Category: 
molecular_function
4
Total items in this category:  
GO:0044119

growth of symbiont in host cell

growth of symbiont in host cell

Details: 
The increase in size or mass of symbiont, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.
GO Category: 
biological_process
50
Total items in this category:  
GO:0044121

growth of symbiont in host organelle

growth of symbiont in host organelle

Details: 
The increase in size or mass of a symbiont, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
GO Category: 
biological_process
5
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
Cholesterol Essentiality t-test p-value Cholesterol/Glycerol Ratio
non-essential 0.730000 1.68

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.