Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2282(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2282
Module neighborhood information for RSP_2282
|Gene||Common Name||Description||Module membership|
|RSP_0148||RSP_0148||Signal transduction histidine kinase (NCBI)||107, 335|
|RSP_0149||RSP_0149||CheY-like receiver protein (NCBI)||107, 112|
|RSP_0153||RSP_0153||hypothetical protein (NCBI)||107, 278|
|RSP_0198||RSP_0198||Phosphatidylglycerophosphate synthase (NCBI)||107, 121|
|RSP_0365||RSP_0365||hypothetical protein (NCBI)||107, 185|
|RSP_0388||RSP_0388||hypothetical protein (NCBI)||107, 377|
|RSP_0392||RSP_0392||probable lactoylglutathione lyase (NCBI)||107, 239|
|RSP_0393||RSP_0393||probable riboflavin biosynthesis protein (NCBI)||107, 323|
|RSP_0419||RSP_0419||hypothetical protein (NCBI)||10, 308|
|RSP_0552||RSP_0552||putative multidrug transporter, SMR family, DMT Superfamily (NCBI)||107, 302|
|RSP_0674||RSP_0674||Putative HolB DNA polymerase III delta prime subunit (NCBI)||10, 36|
|RSP_0715||RSP_0715||Ribonuclease T2 (NCBI)||10, 35|
|RSP_0765||RSP_0765||SAM-dependent methyltransferase (NCBI)||10, 176|
|RSP_0766||RSP_0766||hypothetical protein (NCBI)||10, 56|
|RSP_0795||RSP_0795||hypothetical protein (NCBI)||107, 185|
|RSP_0825||ppnk||probable inorganic polyphosphate/ATP-NAD kinase (NCBI)||1, 10|
|RSP_0845||RSP_0845||hypothetical protein (NCBI)||4, 10|
|RSP_0846||ribA||GTP cyclohydrolase II (NCBI)||4, 10|
|RSP_0847||RSP_0847||two component transcriptional regulator, winged helix family (NCBI)||10, 287|
|RSP_0865||RSP_0865||hypothetical protein (NCBI)||107, 345|
|RSP_0897||RSP_0897||Glutathione S-transferase (NCBI)||10, 20|
|RSP_0935||RSP_0935||MiaB-like Radical SAM protein (NCBI)||63, 107|
|RSP_1006||RSP_1006||hypothetical protein (NCBI)||7, 10|
|RSP_1007||RSP_1007||hypothetical protein (NCBI)||10, 127|
|RSP_1032||RSP_1032||possible O6-methylguanine-DNA methyltransferase (NCBI)||76, 107|
|RSP_1220||hrcA||heat-inducible transcription repressor HrcA (NCBI)||10, 216|
|RSP_1234||aroE||putative shikimate 5-dehydrogenase (NCBI)||107, 308|
|RSP_1292||RSP_1292||putative Aldehyde dehydrogenase (NCBI)||91, 107|
|RSP_1384||RSP_1384||hypothetical protein (NCBI)||10, 323|
|RSP_1558||RSP_1558||putative 2-dehydropantoate 2-reductase (NCBI)||107, 136|
|RSP_1794||RSP_1794||putative lytic transglycosylase (NCBI)||10, 250|
|RSP_1834||RSP_1834||hypothetical protein (NCBI)||10, 185|
|RSP_1868||RSP_1868||serine-pyruvate aminotransferase (NCBI)||10, 127|
|RSP_1891||RSP_1891||Zinc-binding dehydrogenase (NCBI)||10, 158|
|RSP_1965||RSP_1965||Putative Membrane Fusion Protein Family member (NCBI)||107, 247|
|RSP_1971||rnd||Ribonuclease D (NCBI)||51, 107|
|RSP_1984||RSP_1984||histidinol-phosphate-aminotransferase (NCBI)||107, 171|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2120||RSP_2120||putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase (NCBI)||10, 127|
|RSP_2127||purS||Component of phosphoribosylformylglycinamidine (FGAM) synthetase (NCBI)||107, 261|
|RSP_2142||RSP_2142||NifS-related protein (NCBI)||4, 10|
|RSP_2165||putR||transcriptional regulator, AsnC family (NCBI)||107, 126|
|RSP_2241||hisI||Phosphoribosyl-ATP pyrophosphohydrolase (NCBI)||107, 294|
|RSP_2282||chrA||Chromate efflux pump, ChrA (NCBI)||10, 107|
|RSP_2287||RSP_2287||ChaC-like protein (NCBI)||107, 317|
|RSP_2411||RSP_2411||hypothetical protein (NCBI)||20, 107|
|RSP_2505||creA||possible CreA protein (NCBI)||10, 237|
|RSP_2551||exoO||Glycosyl transferase, family 2 (NCBI)||10, 100|
|RSP_2618||RSP_2618||Putative hemolysin (NCBI)||10, 341|
|RSP_2642||RSP_2642||hypothetical protein (NCBI)||107, 121|
|RSP_2825||cobK||Putative precorrin-6x reductase (NCBI)||1, 10|
|RSP_2903||RSP_2903||Probable PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI)||107, 223|
|RSP_3071||RSP_3071||putative hydroxypyruvate reductase/glycerate kinase (NCBI)||107, 329|
|RSP_3309||RSP_3309||transcriptional regulator, AraC family (NCBI)||63, 107|
|RSP_3350||RSP_3350||Lipocalin-related protein (NCBI)||107, 293|
|RSP_3606||RSP_3606||Sigma54-2 (RNA polymerase sigma-54 factor) (NCBI)||10, 162|
|RSP_3695||argE||putative acetylornithine deacetylase (acetylornithinase) (NCBI)||1, 107|
|RSP_3836||RSP_3836||Putative metal-dependent hydrolase (NCBI)||10, 329|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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