Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1966(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1966
Module neighborhood information for RSP_1966
|Gene||Common Name||Description||Module membership|
|RSP_0018||RSP_0018||Putative transcriptional regulator, gntR family (NCBI)||285, 326|
|RSP_0019||RSP_0019||hypothetical protein (NCBI)||48, 285|
|RSP_0204||RSP_0204||metallo-beta-lactamase family protein (NCBI)||285, 370|
|RSP_0354||RSP_0354||hypothetical protein (NCBI)||242, 285|
|RSP_0424||RSP_0424||hypothetical protein (NCBI)||216, 285|
|RSP_0564||RSP_0564||hypothetical protein (NCBI)||19, 73|
|RSP_0595||RSP_0595||hypothetical protein (NCBI)||285, 329|
|RSP_0606||RSP_0606||Putative redox protein (NCBI)||97, 285|
|RSP_0709||cpdB||2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI)||285, 329|
|RSP_0945||RSP_0945||Major facilitator superfamily (MFS) transporter (NCBI)||19, 247|
|RSP_0985||RSP_0985||adenine deaminase (NCBI)||285, 329|
|RSP_1000||RSP_1000||hypothetical protein (NCBI)||2, 285|
|RSP_1063||RSP_1063||Putative Cyclic-diGMP cyclase/phophodiesterase (NCBI)||19, 189|
|RSP_1067||fixR||Short-chain alcohol dehydrogenase (NCBI)||39, 285|
|RSP_1083||RSP_1083||two component transcriptional regulator, winged helix family (NCBI)||285, 329|
|RSP_1297||RSP_1297||transcriptional regulator, LysR family (NCBI)||171, 285|
|RSP_1405||RSP_1405||ROK family protein (NCBI)||285, 381|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1778||RSP_1778||TPR domain protein (NCBI)||68, 285|
|RSP_1779||ispE||Putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI)||68, 285|
|RSP_1780||RSP_1780||hypothetical protein (NCBI)||285, 323|
|RSP_1966||RSP_1966||possible ISSod13, transposase (NCBI)||19, 285|
|RSP_2003||yibQ||YibQ protein (NCBI)||176, 285|
|RSP_2033||RSP_2033||hypothetical protein (NCBI)||19, 238|
|RSP_2122||mtbC||Putative dimethylamine corrinoid protein (NCBI)||185, 285|
|RSP_2140||RSP_2140||hypothetical protein (NCBI)||19, 38|
|RSP_2187||RSP_2187||multidrug efflux pump, Major Facilitator Superfamily ( MFS) (NCBI)||19, 307|
|RSP_2384||RSP_2384||hypothetical protein (NCBI)||19, 368|
|RSP_2396||RSP_2396||hypothetical protein (NCBI)||196, 285|
|RSP_2433||cheY2||Chemotaxis response regulator, CheY2 (NCBI)||285, 370|
|RSP_2649||RSP_2649||Putative Zn-dependent protease (NCBI)||62, 285|
|RSP_2674||RSP_2674||hypothetical protein (NCBI)||48, 285|
|RSP_2700||RSP_2700||ABC oligo/dipeptide transporter, fused ATPase subunits (NCBI)||19, 249|
|RSP_2701||RSP_2701||ABC oligo/dipeptide transporter, inner membrane subunit (NCBI)||19, 249|
|RSP_2702||RSP_2702||ABC oligo/dipeptide transporter, inner membrane subunit (NCBI)||19, 302|
|RSP_2731||ArsH||arsenical resistance protein, ArsH (NCBI)||285, 313|
|RSP_2765||RSP_2765||hypothetical protein (NCBI)||88, 285|
|RSP_2965||RSP_2965||Transcriptional regulator, LysR family (NCBI)||19, 280|
|RSP_2993||RSP_2993||hypothetical protein (NCBI)||19, 355|
|RSP_3067||RSP_3067||hypothetical protein (NCBI)||2, 19|
|RSP_3097||qoxA||QoxA, Quinol oxidase subunit I (NCBI)||19, 380|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3109||RSP_3109||transcriptional regulator, MarR family (NCBI)||62, 285|
|RSP_3111||RSP_3111||Putative Glutathione S-transferase (NCBI)||62, 285|
|RSP_3112||RSP_3112||hypothetical protein (NCBI)||62, 285|
|RSP_3157||RSP_3157||ABC transporter, inner membrane subunit (NCBI)||19, 176|
|RSP_3175||RSP_3175||hypothetical protein (NCBI)||14, 19|
|RSP_3203||RSP_3203||transcriptional regulator, AraC family (NCBI)||14, 19|
|RSP_3218||RSP_3218||Putative oxidoreductase NAD protein (NCBI)||112, 285|
|RSP_3240||RSP_3240||periplasmic sensor signal transduction histidine kinase (NCBI)||14, 19|
|RSP_3260||amiC||Putative negative amidase regulator, AmiC (NCBI)||285, 325|
|RSP_3400||RSP_3400||transcriptional regulator, LysR family (NCBI)||19, 97|
|RSP_3424||RSP_3424||hypothetical protein (NCBI)||38, 285|
|RSP_3787||RSP_3787||hypothetical protein (NCBI)||236, 285|
|RSP_3805||RSP_3805||possible integrase (NCBI)||157, 285|
|RSP_3816||RSP_3816||hypothetical protein (NCBI)||19, 189|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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