Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2649(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2649
Module neighborhood information for RSP_2649
|Gene||Common Name||Description||Module membership|
|RSP_0018||RSP_0018||Putative transcriptional regulator, gntR family (NCBI)||285, 326|
|RSP_0019||RSP_0019||hypothetical protein (NCBI)||48, 285|
|RSP_0027||RSP_0027||hypothetical protein (NCBI)||62, 251|
|RSP_0172||RSP_0172||Predicted transcriptional regulators (NCBI)||38, 62|
|RSP_0204||RSP_0204||metallo-beta-lactamase family protein (NCBI)||285, 370|
|RSP_0226||RSP_0226||Naringenin-chalcone synthase (NCBI)||62, 189|
|RSP_0354||RSP_0354||hypothetical protein (NCBI)||242, 285|
|RSP_0424||RSP_0424||hypothetical protein (NCBI)||216, 285|
|RSP_0456||RSP_0456||hypothetical protein (NCBI)||62, 380|
|RSP_0595||RSP_0595||hypothetical protein (NCBI)||285, 329|
|RSP_0606||RSP_0606||Putative redox protein (NCBI)||97, 285|
|RSP_0709||cpdB||2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI)||285, 329|
|RSP_0751||RSP_0751||hypothetical protein (NCBI)||62, 97|
|RSP_0985||RSP_0985||adenine deaminase (NCBI)||285, 329|
|RSP_1000||RSP_1000||hypothetical protein (NCBI)||2, 285|
|RSP_1067||fixR||Short-chain alcohol dehydrogenase (NCBI)||39, 285|
|RSP_1083||RSP_1083||two component transcriptional regulator, winged helix family (NCBI)||285, 329|
|RSP_1297||RSP_1297||transcriptional regulator, LysR family (NCBI)||171, 285|
|RSP_1405||RSP_1405||ROK family protein (NCBI)||285, 381|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1435||RSP_1435||regulatory protein TetR family (NCBI)||62, 97|
|RSP_1446||RSP_1446||Putative sugar kinase (NCBI)||62, 89|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1778||RSP_1778||TPR domain protein (NCBI)||68, 285|
|RSP_1779||ispE||Putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI)||68, 285|
|RSP_1780||RSP_1780||hypothetical protein (NCBI)||285, 323|
|RSP_1888||RSP_1888||possible acetyltransferase (GNAT) family (NCBI)||38, 62|
|RSP_1923||bioB||Biotin synthase (NCBI)||62, 292|
|RSP_1966||RSP_1966||possible ISSod13, transposase (NCBI)||19, 285|
|RSP_1996||RSP_1996||Putative Competence protein (NCBI)||62, 380|
|RSP_2003||yibQ||YibQ protein (NCBI)||176, 285|
|RSP_2032||RSP_2032||putative hypothetical Gifsy-1 prophage protein (NCBI)||62, 105|
|RSP_2122||mtbC||Putative dimethylamine corrinoid protein (NCBI)||185, 285|
|RSP_2396||RSP_2396||hypothetical protein (NCBI)||196, 285|
|RSP_2433||cheY2||Chemotaxis response regulator, CheY2 (NCBI)||285, 370|
|RSP_2649||RSP_2649||Putative Zn-dependent protease (NCBI)||62, 285|
|RSP_2674||RSP_2674||hypothetical protein (NCBI)||48, 285|
|RSP_2731||ArsH||arsenical resistance protein, ArsH (NCBI)||285, 313|
|RSP_2765||RSP_2765||hypothetical protein (NCBI)||88, 285|
|RSP_2780||oxyR||Transcriptional regulator, OxyR, LysR family (NCBI)||55, 62|
|RSP_2799||RSP_2799||Putative Zinc-containing alcohol dehydrogenase (NCBI)||62, 379|
|RSP_2882||RSP_2882||two component transcriptional regulator, LuxR family (NCBI)||62, 381|
|RSP_3020||RSP_3020||hypothetical protein (NCBI)||38, 62|
|RSP_3027||rdxA||RdxA, iron-sulfur cluster-binding protein (NCBI)||62, 196|
|RSP_3109||RSP_3109||transcriptional regulator, MarR family (NCBI)||62, 285|
|RSP_3110||RSP_3110||Putative Glutathione S-transferase (NCBI)||62, 342|
|RSP_3111||RSP_3111||Putative Glutathione S-transferase (NCBI)||62, 285|
|RSP_3112||RSP_3112||hypothetical protein (NCBI)||62, 285|
|RSP_3218||RSP_3218||Putative oxidoreductase NAD protein (NCBI)||112, 285|
|RSP_3260||amiC||Putative negative amidase regulator, AmiC (NCBI)||285, 325|
|RSP_3278||RSP_3278||Von Willebrand domain containing protein (NCBI)||62, 116|
|RSP_3424||RSP_3424||hypothetical protein (NCBI)||38, 285|
|RSP_3499||RSP_3499||H+-transporting two-sector ATPase, alpha/beta subunit (NCBI)||38, 62|
|RSP_3617||RSP_3617||hypothetical protein (NCBI)||38, 62|
|RSP_3787||RSP_3787||hypothetical protein (NCBI)||236, 285|
|RSP_3805||RSP_3805||possible integrase (NCBI)||157, 285|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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