Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2328(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2328
Module neighborhood information for RSP_2328
|Gene||Common Name||Description||Module membership|
|RSP_0150||RSP_0150||chase sensor signal transducdtion histidine kinase (NCBI)||87, 214|
|RSP_0193||RSP_0193||hypothetical protein (NCBI)||87, 372|
|RSP_0194||RSP_0194||possible ABC transporter, substrate-binding protein (NCBI)||87, 349|
|RSP_0195||RSP_0195||NADH-ubiquinone oxidoreductase 17.2 kD subunit (NCBI)||87, 372|
|RSP_0821||RSP_0821||Esterase/lipase/thioesterase (NCBI)||72, 356|
|RSP_0843||RSP_0843||Conserved protein containing sulfotransfer domain (NCBI)||87, 361|
|RSP_0844||RSP_0844||hypothetical protein (NCBI)||87, 361|
|RSP_0896||RSP_0896||hypothetical protein (NCBI)||7, 87|
|RSP_0939||RSP_0939||hypothetical protein (NCBI)||140, 356|
|RSP_1045||trmD||tRNA (guanine-N1-)-methyltransferase (NCBI)||279, 356|
|RSP_1101||RSP_1101||hypothetical protein (NCBI)||129, 356|
|RSP_1149||gltD||Glutamate synthase (beta subunit) (NCBI)||98, 356|
|RSP_1152||rnd||Ribonuclease D (NCBI)||192, 356|
|RSP_1154||RSP_1154||hypothetical protein (NCBI)||129, 356|
|RSP_1155||RSP_1155||OstA-like protein (NCBI)||129, 356|
|RSP_1225||spo0J||ParB-like partition protein (NCBI)||87, 182|
|RSP_1228||gidB||putative GidB, Glucose inhibited division protein (NCBI)||87, 182|
|RSP_1229||gidA||Glucose-inhibited division protein, A family (NCBI)||87, 182|
|RSP_1230||thdF||Predicted GTPase (NCBI)||87, 182|
|RSP_1233||maf||putative Maf/YceF/YhdE family protein (NCBI)||87, 234|
|RSP_1235||coaE||Dephospho-CoA kinase (NCBI)||87, 267|
|RSP_1236||dnaQ||putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases (NCBI)||87, 267|
|RSP_1686||RSP_1686||Putative Phosphocarrier HPr protein (NCBI)||87, 341|
|RSP_1830||surf-1||Surf1 protein (NCBI)||126, 356|
|RSP_1847||PurD||Phosphoribosylamine--glycine ligase (NCBI)||160, 356|
|RSP_1865||RSP_1865||ketol-acid reductoisomerase (NCBI)||261, 356|
|RSP_1866||RSP_1866||Transcriptional regulator, AsnC family (NCBI)||187, 356|
|RSP_1867||RSP_1867||transcriptional regulator, AsnC family (NCBI)||189, 356|
|RSP_2081||RSP_2081||putative acetyltransferase, GNAT family (NCBI)||87, 267|
|RSP_2191||pccA||Propionyl-CoA carboxylase alpha subunit (NCBI)||121, 356|
|RSP_2284||RSP_2284||Histidinol-phosphate aminotransferase (NCBI)||311, 356|
|RSP_2325||rodA||RodA, Rod Cell shape determining protein (NCBI)||47, 87|
|RSP_2327||RSP_2327||hypothetical protein (NCBI)||356, 383|
|RSP_2328||mreC||Rod shape-determining protein, MreC (NCBI)||87, 356|
|RSP_2458||RSP_2458||ABC transporter, ATPase subunit (NCBI)||87, 130|
|RSP_2459||RSP_2459||ABC transporter, inner membrane subunit (NCBI)||87, 374|
|RSP_2619||trmU||tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI)||187, 356|
|RSP_2748||RSP_2748||possible transcriptional regulator, CopG family (NCBI)||152, 356|
|RSP_2777||RSP_2777||3-oxoacyl-(acyl-carrier-protein) synthase (NCBI)||87, 361|
|RSP_2790||RSP_2790||hypothetical protein (NCBI)||84, 356|
|RSP_2811||RSP_2811||Putative ABC transporter, periplasmic substrate-binding protein (NCBI)||87, 294|
|RSP_2812||RSP_2812||hypothetical protein (NCBI)||87, 240|
|RSP_2902||RSP_2902||Putative organic solvent tolerance protein (NCBI)||87, 268|
|RSP_2904||pdxA1||Putative4-hydroxythreonine-4-phosphate dehydrogenase 1 (NCBI)||87, 130|
|RSP_2905||ksgA||Putative ribosomal RNA adenine dimethylase (NCBI)||87, 267|
|RSP_2912||RSP_2912||Predicted pyrophosphatase (NCBI)||279, 356|
|RSP_2970||RSP_2970||Transporter, Major facilitator superfamily (MFS) (NCBI)||231, 356|
|RSP_3170||RSP_3170||Demethylmenaquinone methyltransferase (NCBI)||337, 356|
|RSP_3171||RSP_3171||3-hydroxyisobutyrate dehydrogenase (NCBI)||337, 356|
|RSP_3172||RSP_3172||hypothetical protein (NCBI)||337, 356|
|RSP_3200||RSP_3200||Molecular chaperone, DnaK (NCBI)||146, 356|
|RSP_3227||RSP_3227||Lysine 2,3-aminomutase (NCBI)||289, 356|
|RSP_3344||RSP_3344||PAS sensor diguanylate cyclase (NCBI)||174, 356|
|RSP_3593||RSP_3593||hypothetical protein (NCBI)||214, 356|
|RSP_3607||RSP_3607||hypothetical protein (NCBI)||129, 356|
|RSP_3777||RSP_3777||hypothetical protein (NCBI)||29, 356|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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