Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
3-oxoacyl-(acyl-carrier-protein) synthase (NCBI)
Functional Annotations (5)
|3-oxoacyl-(acyl-carrier-protein) synthase||cog/ cog|
|catalytic activity||go/ molecular_function|
|biosynthetic process||go/ biological_process|
|Fatty acid biosynthesis||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for RSP_2777(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2777
Module neighborhood information for RSP_2777
|Gene||Common Name||Description||Module membership|
|RSP_0150||RSP_0150||chase sensor signal transducdtion histidine kinase (NCBI)||87, 214|
|RSP_0193||RSP_0193||hypothetical protein (NCBI)||87, 372|
|RSP_0194||RSP_0194||possible ABC transporter, substrate-binding protein (NCBI)||87, 349|
|RSP_0195||RSP_0195||NADH-ubiquinone oxidoreductase 17.2 kD subunit (NCBI)||87, 372|
|RSP_0843||RSP_0843||Conserved protein containing sulfotransfer domain (NCBI)||87, 361|
|RSP_0844||RSP_0844||hypothetical protein (NCBI)||87, 361|
|RSP_0896||RSP_0896||hypothetical protein (NCBI)||7, 87|
|RSP_0992||phaA/B||pH adaption potassium efflux system, PhaA/B subunit (NCBI)||32, 361|
|RSP_0993||phaC||pH adaption potassium efflux system, PhaC subunit (NCBI)||32, 361|
|RSP_0994||phaD||pH adaption potassium efflux system, PhaD subunit (NCBI)||32, 361|
|RSP_0995||phaE||pH adaption potassium efflux system, PhaE subunit (NCBI)||32, 361|
|RSP_0996||phaF||pH adaption potassium efflux system, PhaF subunit (NCBI)||32, 361|
|RSP_0997||phaG||pH adaption potassium efflux system, PhaG subunit (NCBI)||32, 361|
|RSP_1225||spo0J||ParB-like partition protein (NCBI)||87, 182|
|RSP_1228||gidB||putative GidB, Glucose inhibited division protein (NCBI)||87, 182|
|RSP_1229||gidA||Glucose-inhibited division protein, A family (NCBI)||87, 182|
|RSP_1230||thdF||Predicted GTPase (NCBI)||87, 182|
|RSP_1233||maf||putative Maf/YceF/YhdE family protein (NCBI)||87, 234|
|RSP_1235||coaE||Dephospho-CoA kinase (NCBI)||87, 267|
|RSP_1236||dnaQ||putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases (NCBI)||87, 267|
|RSP_1686||RSP_1686||Putative Phosphocarrier HPr protein (NCBI)||87, 341|
|RSP_1744||RSP_1744||CrcB-like protein (NCBI)||160, 361|
|RSP_1745||RSP_1745||Pseudouridine synthase (NCBI)||160, 361|
|RSP_1746||RSP_1746||hypothetical protein (NCBI)||326, 361|
|RSP_2081||RSP_2081||putative acetyltransferase, GNAT family (NCBI)||87, 267|
|RSP_2325||rodA||RodA, Rod Cell shape determining protein (NCBI)||47, 87|
|RSP_2328||mreC||Rod shape-determining protein, MreC (NCBI)||87, 356|
|RSP_2342||gpt||Xanthine-Guanine phosphoribosyltransferase (NCBI)||361, 369|
|RSP_2458||RSP_2458||ABC transporter, ATPase subunit (NCBI)||87, 130|
|RSP_2459||RSP_2459||ABC transporter, inner membrane subunit (NCBI)||87, 374|
|RSP_2523||nuoI||Subunit of NADH-ubiquinone oxidoreductase (Complex I) that contains 2 Fe-S centers (NCBI)||269, 361|
|RSP_2532||birA||putative biotin protein ligase (NCBI)||17, 361|
|RSP_2533||RSP_2533||Putative transcriptional regulator (NCBI)||361, 372|
|RSP_2534||RSP_2534||Predicted hydrolase of the metallo-beta-lactamase superfamily (NCBI)||84, 361|
|RSP_2777||RSP_2777||3-oxoacyl-(acyl-carrier-protein) synthase (NCBI)||87, 361|
|RSP_2811||RSP_2811||Putative ABC transporter, periplasmic substrate-binding protein (NCBI)||87, 294|
|RSP_2812||RSP_2812||hypothetical protein (NCBI)||87, 240|
|RSP_2902||RSP_2902||Putative organic solvent tolerance protein (NCBI)||87, 268|
|RSP_2904||pdxA1||Putative4-hydroxythreonine-4-phosphate dehydrogenase 1 (NCBI)||87, 130|
|RSP_2905||ksgA||Putative ribosomal RNA adenine dimethylase (NCBI)||87, 267|
|RSP_3710||RSP_3710||Monovalent cation/proton antiporter subunit/mnhG (NCBI)||311, 361|
|RSP_3711||RSP_3711||Multisubunit Na+/H+ antiporter MnhF subunit (NCBI)||311, 361|
|RSP_3714||RSP_3714||pH adaption potassium efflux system, phaC subunit (NCBI)||311, 361|
|RSP_3715||RSP_3715||pH adaption potassium efflux system, PhaB subunit (NCBI)||311, 361|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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