Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Putative organic solvent tolerance protein (NCBI)
Functional Annotations (4)
|Organic solvent tolerance protein OstA||cog/ cog|
|response to organic substance||go/ biological_process|
|cellular membrane organization||go/ biological_process|
|outer membrane||go/ cellular_component|
Regulation information for RSP_2902(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2902
Module neighborhood information for RSP_2902
|Gene||Common Name||Description||Module membership|
|RSP_0150||RSP_0150||chase sensor signal transducdtion histidine kinase (NCBI)||87, 214|
|RSP_0193||RSP_0193||hypothetical protein (NCBI)||87, 372|
|RSP_0194||RSP_0194||possible ABC transporter, substrate-binding protein (NCBI)||87, 349|
|RSP_0195||RSP_0195||NADH-ubiquinone oxidoreductase 17.2 kD subunit (NCBI)||87, 372|
|RSP_0780||RSP_0780||hypothetical protein with ATP/GTP-binding site (NCBI)||13, 268|
|RSP_0843||RSP_0843||Conserved protein containing sulfotransfer domain (NCBI)||87, 361|
|RSP_0844||RSP_0844||hypothetical protein (NCBI)||87, 361|
|RSP_0848||xthA1||Exodeoxyribonuclease III (NCBI)||184, 268|
|RSP_0896||RSP_0896||hypothetical protein (NCBI)||7, 87|
|RSP_0944||purU||PurU, Formyltetrahydrofolate deformylase (NCBI)||124, 268|
|RSP_0998||nhaD||Na+/H+ antiporter, NhaD (NCBI)||160, 268|
|RSP_1052||RSP_1052||possible Acetyltransferase (NCBI)||268, 271|
|RSP_1105||DapB||Dihydrodipicolinate reductase (DHPR) (NCBI)||268, 299|
|RSP_1225||spo0J||ParB-like partition protein (NCBI)||87, 182|
|RSP_1228||gidB||putative GidB, Glucose inhibited division protein (NCBI)||87, 182|
|RSP_1229||gidA||Glucose-inhibited division protein, A family (NCBI)||87, 182|
|RSP_1230||thdF||Predicted GTPase (NCBI)||87, 182|
|RSP_1233||maf||putative Maf/YceF/YhdE family protein (NCBI)||87, 234|
|RSP_1235||coaE||Dephospho-CoA kinase (NCBI)||87, 267|
|RSP_1236||dnaQ||putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases (NCBI)||87, 267|
|RSP_1381||RSP_1381||hypothetical protein (NCBI)||47, 268|
|RSP_1382||RSP_1382||radical SAM superfamily protein (NCBI)||266, 268|
|RSP_1484||RSP_1484||hypothetical protein (NCBI)||209, 268|
|RSP_1485||RSP_1485||ATP-dependent RNA helicase (NCBI)||209, 268|
|RSP_1686||RSP_1686||Putative Phosphocarrier HPr protein (NCBI)||87, 341|
|RSP_1706||RSP_1706||Putative acetyltransferase (NCBI)||13, 268|
|RSP_1832||RSP_1832||peptidase, M16 family (NCBI)||69, 268|
|RSP_2004||trpE||Anthranilate synthase component I and chorismate binding protein (NCBI)||203, 268|
|RSP_2081||RSP_2081||putative acetyltransferase, GNAT family (NCBI)||87, 267|
|RSP_2304||ribF||Riboflavin kinase / FAD synthetase = FMN adenylyltransferase, RibF (NCBI)||268, 343|
|RSP_2325||rodA||RodA, Rod Cell shape determining protein (NCBI)||47, 87|
|RSP_2328||mreC||Rod shape-determining protein, MreC (NCBI)||87, 356|
|RSP_2454||purF||Amidophosphoribosyltransferase (NCBI)||218, 268|
|RSP_2458||RSP_2458||ABC transporter, ATPase subunit (NCBI)||87, 130|
|RSP_2459||RSP_2459||ABC transporter, inner membrane subunit (NCBI)||87, 374|
|RSP_2714||lpxA||Acyl-(acyl carrier protein))-UDP-N-acetylglucosamine O-acyltransferase (NCBI)||268, 281|
|RSP_2777||RSP_2777||3-oxoacyl-(acyl-carrier-protein) synthase (NCBI)||87, 361|
|RSP_2778||RSP_2778||hypothetical protein (NCBI)||224, 268|
|RSP_2811||RSP_2811||Putative ABC transporter, periplasmic substrate-binding protein (NCBI)||87, 294|
|RSP_2812||RSP_2812||hypothetical protein (NCBI)||87, 240|
|RSP_2841||trkA||potassium uptake tranporter, NAD-binding subunit, TrkA (NCBI)||63, 268|
|RSP_2902||RSP_2902||Putative organic solvent tolerance protein (NCBI)||87, 268|
|RSP_2904||pdxA1||Putative4-hydroxythreonine-4-phosphate dehydrogenase 1 (NCBI)||87, 130|
|RSP_2905||ksgA||Putative ribosomal RNA adenine dimethylase (NCBI)||87, 267|
|RSP_3549||hisG||ATP phosphoribosyltransferase (NCBI)||160, 268|
|RSP_3550||RSP_3550||Aminoacyl-transfer RNA synthetase, class II (NCBI)||212, 268|
|RSP_3664||RSP_3664||transcriptional regulator, GntR family (NCBI)||268, 331|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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