Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Dephospho-CoA kinase (NCBI)
Functional Annotations (6)
|Dephospho-CoA kinase||cog/ cog|
|dephospho-CoA kinase activity||go/ molecular_function|
|ATP binding||go/ molecular_function|
|Pantothenate and CoA biosynthesis||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for RSP_1235(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1235
Module neighborhood information for RSP_1235
|Gene||Common Name||Description||Module membership|
|RSP_0150||RSP_0150||chase sensor signal transducdtion histidine kinase (NCBI)||87, 214|
|RSP_0193||RSP_0193||hypothetical protein (NCBI)||87, 372|
|RSP_0194||RSP_0194||possible ABC transporter, substrate-binding protein (NCBI)||87, 349|
|RSP_0195||RSP_0195||NADH-ubiquinone oxidoreductase 17.2 kD subunit (NCBI)||87, 372|
|RSP_0349||RSP_0349||ABC transporter, ATPase subunit (NCBI)||267, 293|
|RSP_0369||RSP_0369||hypothetical protein (NCBI)||47, 267|
|RSP_0459||RSP_0459||hypothetical protein (NCBI)||47, 267|
|RSP_0772||parE||DNA topoisomerase II/DNA gyrase, subunit B (NCBI)||69, 267|
|RSP_0843||RSP_0843||Conserved protein containing sulfotransfer domain (NCBI)||87, 361|
|RSP_0844||RSP_0844||hypothetical protein (NCBI)||87, 361|
|RSP_0896||RSP_0896||hypothetical protein (NCBI)||7, 87|
|RSP_1013||RSP_1013||possible Hemolysin (NCBI)||68, 267|
|RSP_1069||RSP_1069||hypothetical protein (NCBI)||233, 267|
|RSP_1170||RSP_1170||OmpA family protein (NCBI)||267, 355|
|RSP_1225||spo0J||ParB-like partition protein (NCBI)||87, 182|
|RSP_1228||gidB||putative GidB, Glucose inhibited division protein (NCBI)||87, 182|
|RSP_1229||gidA||Glucose-inhibited division protein, A family (NCBI)||87, 182|
|RSP_1230||thdF||Predicted GTPase (NCBI)||87, 182|
|RSP_1233||maf||putative Maf/YceF/YhdE family protein (NCBI)||87, 234|
|RSP_1235||coaE||Dephospho-CoA kinase (NCBI)||87, 267|
|RSP_1236||dnaQ||putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases (NCBI)||87, 267|
|RSP_1293||RSP_1293||putative acyl-carrier protein (NCBI)||267, 380|
|RSP_1503||RSP_1503||hypothetical protein (NCBI)||265, 267|
|RSP_1673||RSP_1673||Probable holo-acyl carrier protein synthase (NCBI)||265, 267|
|RSP_1683||RSP_1683||putative kinase/phosphatase (NCBI)||267, 341|
|RSP_1686||RSP_1686||Putative Phosphocarrier HPr protein (NCBI)||87, 341|
|RSP_2081||RSP_2081||putative acetyltransferase, GNAT family (NCBI)||87, 267|
|RSP_2212||rimI||putative acetyltransferase (NCBI)||159, 267|
|RSP_2260||ydjG||hypothetical protein (NCBI)||267, 342|
|RSP_2325||rodA||RodA, Rod Cell shape determining protein (NCBI)||47, 87|
|RSP_2326||pbpA||Cell division protein FtsI (NCBI)||47, 267|
|RSP_2328||mreC||Rod shape-determining protein, MreC (NCBI)||87, 356|
|RSP_2457||RSP_2457||hypothetical protein (NCBI)||30, 267|
|RSP_2458||RSP_2458||ABC transporter, ATPase subunit (NCBI)||87, 130|
|RSP_2459||RSP_2459||ABC transporter, inner membrane subunit (NCBI)||87, 374|
|RSP_2567||sqdC||putative sulfolipid biosynthesis protein (NCBI)||47, 267|
|RSP_2628||gltX/glnS||glutamyl-/ glutaminyl-tRNA synthetase (NCBI)||65, 267|
|RSP_2777||RSP_2777||3-oxoacyl-(acyl-carrier-protein) synthase (NCBI)||87, 361|
|RSP_2811||RSP_2811||Putative ABC transporter, periplasmic substrate-binding protein (NCBI)||87, 294|
|RSP_2812||RSP_2812||hypothetical protein (NCBI)||87, 240|
|RSP_2902||RSP_2902||Putative organic solvent tolerance protein (NCBI)||87, 268|
|RSP_2904||pdxA1||Putative4-hydroxythreonine-4-phosphate dehydrogenase 1 (NCBI)||87, 130|
|RSP_2905||ksgA||Putative ribosomal RNA adenine dimethylase (NCBI)||87, 267|
|RSP_3249||RSP_3249||ABC peptide transporter, duplicated ATPase domains (NCBI)||267, 362|
|RSP_3250||RSP_3250||ABC peptide transporter, inner membrane subunit (NCBI)||267, 340|
|RSP_3251||RSP_3251||ABC peptide transporter, inner membrane subunit (NCBI)||267, 362|
|RSP_3301||eda||2-dehydro-3-deoxyphosphogluconate aldolase (NCBI)||265, 267|
|RSP_3373||RSP_3373||ABC efflux transporter, inner membrane subunit (NCBI)||42, 267|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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