Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC1440(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC1440
|Gene||Common Name||Description||Module membership|
|BC0338||BC0338||hypothetical protein (NCBI ptt file)||387, 391|
|BC0378||BC0378||5-methylthioribose kinase (NCBI ptt file)||387, 516|
|BC0380||BC0380||L-fuculose phosphate aldolase (NCBI ptt file)||387, 516|
|BC0414||BC0414||PTS system, glucose-specific IIBC component (NCBI ptt file)||387, 454|
|BC0415||BC0415||Exodeoxyribonuclease III (NCBI ptt file)||387, 454|
|BC0592||BC0592||Alanine dehydrogenase (NCBI ptt file)||234, 387|
|BC0631||BC0631||PTS system, trehalose-specific IIBC component (NCBI ptt file)||283, 387|
|BC0632||BC0632||Trehalose-6-phosphate hydrolase (NCBI ptt file)||283, 387|
|BC0774||BC0774||Sucrose-6-phosphate hydrolase (NCBI ptt file)||387, 478|
|BC0775||BC0775||PTS system, sucrose-specific IIBC component (NCBI ptt file)||387, 478|
|BC0807||BC0807||PTS system, diacetylchitobiose-specific IIA component (NCBI ptt file)||234, 387|
|BC0808||BC0808||PTS system, diacetylchitobiose-specific IIB component (NCBI ptt file)||387, 516|
|BC0809||BC0809||PTS system, diacetylchitobiose-specific IIC component (NCBI ptt file)||199, 387|
|BC0841||BC0841||Glucokinase regulatory protein (NCBI ptt file)||80, 387|
|BC0842||BC0842||PTS system, sucrose-specific IIBC component (NCBI ptt file)||387, 454|
|BC0843||BC0843||outer surface protein (NCBI ptt file)||80, 387|
|BC0853||BC0853||Quaternary ammonium compound-resistance protein (NCBI ptt file)||80, 498|
|BC0960||BC0960||hypothetical protein (NCBI ptt file)||46, 80|
|BC1032||BC1032||Transcriptional repressor (NCBI ptt file)||80, 456|
|BC1083||BC1083||Transcriptional regulator, LacI family (NCBI ptt file)||387, 516|
|BC1106||BC1106||hypothetical protein (NCBI ptt file)||80, 377|
|BC1185||BC1185||Oligopeptide-binding protein oppA (NCBI ptt file)||199, 387|
|BC1334||BC1334||hypothetical Exported Protein (NCBI ptt file)||80, 498|
|BC1440||BC1440||hypothetical protein (NCBI ptt file)||80, 387|
|BC1845||BC1845||hypothetical protein (NCBI ptt file)||80, 523|
|BC2129||BC2129||hypothetical protein (NCBI ptt file)||80, 267|
|BC2238||BC2238||hypothetical protein (NCBI ptt file)||387, 516|
|BC2297||BC2297||hypothetical protein (NCBI ptt file)||80, 291|
|BC3206||BC3206||hypothetical protein (NCBI ptt file)||80, 130|
|BC3574||BC3574||Spore germination protein SA (NCBI ptt file)||80, 130|
|BC3575||BC3575||Spore germination protein SB (NCBI ptt file)||80, 130|
|BC3576||BC3576||Spore germination protein SC (NCBI ptt file)||80, 130|
|BC3718||BC3718||PTS system, fructose-specific IIABC component (NCBI ptt file)||387, 516|
|BC4497||BC4497||Tetracycline resistence protein TETA(L)/TETK (NCBI ptt file)||80, 456|
|BC4526||BC4526||acyl-CoA synthase (RefSeq)||358, 387|
|BC4814||BC4814||hypothetical protein (NCBI ptt file)||234, 387|
|BC4843||BC4843||2-dehydro-3-deoxygluconokinase (NCBI ptt file)||387, 516|
|BC4844||BC4844||4-Hydroxy-2-oxoglutarate aldolase (NCBI ptt file)||387, 516|
|BC4845||BC4845||L-seryl-tRNA(Sec) selenium transferase (NCBI ptt file)||387, 516|
|BC4846||BC4846||Dihydroorotase (NCBI ptt file)||387, 516|
|BC4934||BC4934||hypothetical protein (NCBI ptt file)||80, 235|
|BC5211||BC5211||PTS system, lichenan oligosaccharide-specific IIC component (NCBI ptt file)||387, 516|
|BC5228||BC5228||L-lactate permease (NCBI ptt file)||387, 516|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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