Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC5170(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC5170
|Gene||Common Name||Description||Module membership|
|BC0205||BC0205||hypothetical protein (NCBI ptt file)||7, 477|
|BC0335||BC0335||hypothetical protein (NCBI ptt file)||166, 337|
|BC0336||BC0336||Somatin-like protein (NCBI ptt file)||103, 337|
|BC0616||BC0616||Iron(III) dicitrate-binding protein (NCBI ptt file)||7, 443|
|BC0630||BC0630||Trehalose operon transcriptional repressor (NCBI ptt file)||7, 475|
|BC0681||BC0681||hypothetical protein (NCBI ptt file)||7, 294|
|BC0805||BC0805||outer surface protein (NCBI ptt file)||7, 380|
|BC0806||BC0806||Transcription antiterminator, BglG family (NCBI ptt file)||7, 290|
|BC0961||BC0961||Transcriptional regulator, TetR family (NCBI ptt file)||7, 401|
|BC1133||BC1133||hypothetical protein (NCBI ptt file)||7, 354|
|BC1150||BC1150||IG hypothetical 15940 (NCBI ptt file)||126, 337|
|BC1345||BC1345||hypothetical protein (NCBI ptt file)||7, 401|
|BC1349||BC1349||Acetyltransferase (NCBI ptt file)||7, 264|
|BC1432||BC1432||Proton/sodium-glutamate symport protein (NCBI ptt file)||133, 337|
|BC1601||BC1601||hypothetical protein (NCBI ptt file)||7, 146|
|BC1680||BC1680||Transcriptional regulator, XRE family (NCBI ptt file)||1, 337|
|BC1755||BC1755||UDP-galactose-lipid carrier transferase (NCBI ptt file)||26, 337|
|BC1962||BC1962||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||7, 264|
|BC2062||BC2062||hypothetical protein (NCBI ptt file)||7, 434|
|BC2516||BC2516||Short chain dehydrogenase (NCBI ptt file)||7, 220|
|BC2558||BC2558||Transcriptional regulator (NCBI ptt file)||7, 440|
|BC2585||BC2585||Portal protein (NCBI ptt file)||7, 316|
|BC2659||BC2659||Glutamate-rich protein grpB (NCBI ptt file)||7, 294|
|BC2665||BC2665||Teicoplanin resistance protein vanZ (NCBI ptt file)||97, 337|
|BC2717||BC2717||hypothetical protein (NCBI ptt file)||100, 337|
|BC2718||BC2718||hypothetical protein (NCBI ptt file)||100, 337|
|BC2817||BC2817||hypothetical protein (NCBI ptt file)||337, 354|
|BC2841||BC2841||hypothetical protein (NCBI ptt file)||296, 337|
|BC2842||BC2842||hypothetical protein (NCBI ptt file)||296, 337|
|BC2908||BC2908||hypothetical protein (NCBI ptt file)||7, 228|
|BC2950||BC2950||putative kinase (NCBI ptt file)||7, 364|
|BC2957||BC2957||hypothetical protein (NCBI ptt file)||7, 401|
|BC2995||BC2995||hypothetical protein (NCBI ptt file)||7, 100|
|BC2996||BC2996||Transcriptional regulator, PadR family (NCBI ptt file)||7, 440|
|BC3061||BC3061||Penicillin-binding protein (NCBI ptt file)||24, 337|
|BC3279||BC3279||hypothetical protein (NCBI ptt file)||7, 440|
|BC3318||BC3318||hypothetical protein (NCBI ptt file)||7, 100|
|BC3331||BC3331||hypothetical protein (NCBI ptt file)||7, 517|
|BC3333||BC3333||hypothetical Cytosolic Protein (NCBI ptt file)||7, 478|
|BC3411||BC3411||XoxI (NCBI ptt file)||7, 478|
|BC3437||BC3437||hypothetical Cytosolic Protein (NCBI ptt file)||313, 337|
|BC3448||BC3448||hypothetical Cytosolic Protein (NCBI ptt file)||7, 228|
|BC3508||BC3508||hypothetical protein (NCBI ptt file)||128, 337|
|BC3536||BC3536||hypothetical protein (NCBI ptt file)||7, 517|
|BC3606||BC3606||Esterase (NCBI ptt file)||7, 401|
|BC3648||BC3648||CarD-like transcriptional regulator (NCBI ptt file)||98, 337|
|BC3650||BC3650||Imidazolonepropionase (NCBI ptt file)||138, 337|
|BC3651||BC3651||Urocanate hydratase (NCBI ptt file)||138, 337|
|BC3652||BC3652||Histidine ammonia-lyase (NCBI ptt file)||186, 337|
|BC3740||BC3740||ADA regulatory protein (NCBI ptt file)||224, 337|
|BC3741||BC3741||O6-methylguanine-DNA methyltransferase (NCBI ptt file)||224, 337|
|BC3742||BC3742||DNA-3-methyladenine glycosylase II (NCBI ptt file)||327, 337|
|BC4124||BC4124||Transcriptional regulator, MarR family (NCBI ptt file)||166, 337|
|BC4152||BC4152||hypothetical protein (NCBI ptt file)||166, 337|
|BC4153||BC4153||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||88, 337|
|BC4241||BC4241||hypothetical protein (NCBI ptt file)||7, 199|
|BC4245||BC4245||hypothetical protein (NCBI ptt file)||28, 337|
|BC4454||BC4454||hypothetical protein (NCBI ptt file)||313, 337|
|BC4532||BC4532||hypothetical protein (NCBI ptt file)||7, 440|
|BC4675||BC4675||Sex pheromone staph-cAM373 precursor (NCBI ptt file)||7, 100|
|BC4953||BC4953||hypothetical protein (NCBI ptt file)||285, 337|
|BC5048||BC5048||Ferritin (NCBI ptt file)||1, 337|
|BC5170||BC5170||Integral membrane protein (NCBI ptt file)||7, 337|
|BC5171||BC5171||Transcriptional regulator, MerR family (NCBI ptt file)||7, 337|
|BC5172||BC5172||hypothetical protein (NCBI ptt file)||337, 475|
|BC5187||BC5187||Cytochrome c551 (NCBI ptt file)||7, 481|
|BC5490||BC5490||LSU ribosomal protein L34P (NCBI ptt file)||7, 517|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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