Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0070(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0070
|Gene||Common Name||Description||Module membership|
|CAC0038||CAC0038||Hypothetical protein (NCBI ptt file)||44, 258|
|CAC0070||CAC0070||Hypothetical protein (NCBI ptt file)||44, 78|
|CAC0188||nagA||N-acetylglucosamine-6-phosphate deacetylase (gene nagA) (NCBI ptt file)||44, 366|
|CAC0441||CAC0441||Uncharacterized conserved membrane protein of SANA family (NCBI ptt file)||14, 44|
|CAC0466||CAC0466||Hypothetical protein (NCBI ptt file)||78, 177|
|CAC0467||CAC0467||Uncharacterized membrane protein, homolog of YDAH B.subtilis (NCBI ptt file)||78, 174|
|CAC0468||CAC0468||HAD superfamily hydrolase (NCBI ptt file)||78, 177|
|CAC0509||CAC0509||PHP family protein (NCBI ptt file)||44, 258|
|CAC0764||CAC0764||NADPH-dependent glutamate synthase beta chain (NCBI ptt file)||44, 91|
|CAC0811||CAC0811||Hydrogenase expression-formation factor (hypD) (NCBI ptt file)||78, 125|
|CAC0946||CAC0946||ComE-like protein, Metallo beta-lactamase superfamily hydrolase, secreted (NCBI ptt file)||44, 222|
|CAC1409||CAC1409||Predicted membrane protein (NCBI ptt file)||78, 351|
|CAC1552||CAC1552||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||44, 366|
|CAC1594||rpsD||Ribosomal protein S4 (NCBI ptt file)||78, 177|
|CAC1637||CAC1637||Hypothetical protein, CF-12 family (NCBI ptt file)||44, 349|
|CAC1870||CAC1870||Hypothetical protein (NCBI ptt file)||44, 342|
|CAC1951||CAC1951||Site-specific recombinases, DNA invertase Pin homolog (NCBI ptt file)||44, 332|
|CAC2036||CAC2036||Hypothetical protein (NCBI ptt file)||78, 163|
|CAC2039||CAC2039||Hypothetical protein, CF-5 family (NCBI ptt file)||44, 190|
|CAC2347||CAC2347||Glycosyltransferase (NCBI ptt file)||78, 188|
|CAC2434||CAC2434||Membrane associatehistidine kinase with HAMP domain (NCBI ptt file)||44, 312|
|CAC2436||CAC2436||Uncharacterized conserved membrane protein (NCBI ptt file)||44, 271|
|CAC2469||CAC2469||Lactoylglutathione lyase (fragment) (NCBI ptt file)||78, 86|
|CAC2470||CAC2470||Uncharacterized Zn-finger protein (NCBI ptt file)||38, 78|
|CAC2741||gpmA||Phosphoglycerate mutase (NCBI ptt file)||78, 101|
|CAC2744||CAC2744||Predicted membrane protein (NCBI ptt file)||78, 338|
|CAC2862||murA||UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file)||78, 98|
|CAC3007||CAC3007||ATPase component of MDR-type ABC transporter, two ATPase domains (NCBI ptt file)||19, 78|
|CAC3012||CAC3012||ATPase component of ABC transporter, with duplicated ATPase domains (NCBI ptt file)||44, 84|
|CAC3136||tufA||Elongation Factor Tu (Ef-Tu) (NCBI ptt file)||78, 335|
|CAC3194||murD||UDP-N-acetylmuramoylalanine D-glutamate ligase (NCBI ptt file)||44, 142|
|CAC3220||CAC3220||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||44, 174|
|CAC3550||natB||Na+ ABC transporter, NATB (NCBI ptt file)||78, 203|
|CAC3570||accC||Biotin carboxylase (NCBI ptt file)||44, 225|
|CAC3572||accB||Biotin carboxyl carrier protein of acetyl-CoA carboxylase (NCBI ptt file)||44, 91|
|CAC3678||kdpD||Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) (NCBI ptt file)||22, 78|
|CAC3679||kdpX||Uncharacterized protein of kdp operon, kdpX (NCBI ptt file)||22, 78|
|CAC3681||kdpB/atkB||K+-transporting ATPase, b chain (NCBI ptt file)||22, 78|
|CAC3690||CAC3690||Uncharacterized conserved protein, related to polyketide cyclase (CypC) (NCBI ptt file)||78, 125|
|CAC3703||CAC3703||Hypothetical protein (NCBI ptt file)||44, 349|
|CAC3704||CAC3704||Hypothetical protein, CF-7 family (NCBI ptt file)||44, 356|
|CAC3705||CAC3705||Hypothetical protein, CF-37 family(almost identical) (NCBI ptt file)||44, 349|
|CAC3706||CAC3706||Hypothetical protein, CF-12 family (NCBI ptt file)||44, 349|
|CAC3707||CAC3707||Uncharacterized protein, homolog of Bacillus firmus (gi:2654481) (NCBI ptt file)||44, 349|
|CAC3708||CAC3708||Hypothetical protein (NCBI ptt file)||36, 44|
|CAC3709||CAC3709||DNA segregation ATPase, FtsK/SpoIIIE family, YUKA B.subtilis ortholog (NCBI ptt file)||36, 44|
|CAC3710||CAC3710||Uncharacterized protein, YUKC B.subtilis homolog (NCBI ptt file)||36, 44|
|CAC3711||CAC3711||Hypothetical protein (NCBI ptt file)||36, 44|
|CAC3712||CAC3712||Hypothetical protein (NCBI ptt file)||44, 356|
|CAC3713||CAC3713||Uncharacterized conserved protein, yukE/yfjA B.subtilis family (NCBI ptt file)||44, 349|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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