Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0346(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0346
|Gene||Common Name||Description||Module membership|
|CAC0240||CAC0240||Response regulator (CheY-like recever domain and HTH DNA-binding domain) (NCBI ptt file)||210, 349|
|CAC0346||CAC0346||Hypothetical protein (NCBI ptt file)||210, 349|
|CAC0348||CAC0348||Hypothetical protein, CF-21 family (NCBI ptt file)||124, 210|
|CAC0369||CAC0369||Predicted acetyltransferase (NCBI ptt file)||124, 210|
|CAC0545||CAC0545||Uncharacterized small protein, homolog of Treponema (6136517) (NCBI ptt file)||30, 210|
|CAC0740||CAC0740||Uncharacterized conserved protein, YlxP family (NCBI ptt file)||101, 210|
|CAC0781||CAC0781||Hypothetical protein (NCBI ptt file)||210, 337|
|CAC0964||CAC0964||Hypothetical protein (NCBI ptt file)||105, 210|
|CAC1623||CAC1623||Uncharacterized protein, ortholog of Thermotoga (4980645) (NCBI ptt file)||210, 298|
|CAC1636||CAC1636||Uncharacterized protein, homolog of B. firmus (2654481) (NCBI ptt file)||291, 349|
|CAC1637||CAC1637||Hypothetical protein, CF-12 family (NCBI ptt file)||44, 349|
|CAC1638||CAC1638||Hypothetical protein, CF-37 family(almost identical) (NCBI ptt file)||291, 349|
|CAC1639||CAC1639||Hypothetical protein, CF-7 family (NCBI ptt file)||291, 349|
|CAC1640||CAC1640||Uncharacterized protein, YQCG B.subtilis homolog; CF-7 family (NCBI ptt file)||291, 349|
|CAC1855||CAC1855||Hypothetical protein (NCBI ptt file)||63, 210|
|CAC2551||CAC2551||RNAse H family protein (NCBI ptt file)||19, 349|
|CAC2557||CAC2557||Hypothetical protein (NCBI ptt file)||223, 349|
|CAC2561||CAC2561||Predicted acetyltransferase (NCBI ptt file)||113, 210|
|CAC2932||CAC2932||ABC-type MDR transporter, ATPase component (NCBI ptt file)||223, 349|
|CAC2974||CAC2974||Predicted protease from collagenase family (NCBI ptt file)||210, 273|
|CAC3026||CAC3026||Protein from GDSL (phospholipase B) family of lipolitic enzymes (NCBI ptt file)||124, 210|
|CAC3294||CAC3294||Hypothetical protein (NCBI ptt file)||210, 337|
|CAC3472||CAC3472||Protein containing transcriptional regulator domain (NCBI ptt file)||349, 357|
|CAC3511||CAC3511||Membrane associated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||210, 357|
|CAC3525||CAC3525||Uncharacterized conserved protein, YjeB/RRF2 family (NCBI ptt file)||223, 349|
|CAC3534||CAC3534||Site-specific modification DNA-methyltransferase (NCBI ptt file)||120, 349|
|CAC3575||fabD||Malonyl CoA-acyl carrier protein transacylase (NCBI ptt file)||210, 337|
|CAC3661||CAC3661||Glycosyltransferase (NCBI ptt file)||210, 273|
|CAC3703||CAC3703||Hypothetical protein (NCBI ptt file)||44, 349|
|CAC3705||CAC3705||Hypothetical protein, CF-37 family(almost identical) (NCBI ptt file)||44, 349|
|CAC3706||CAC3706||Hypothetical protein, CF-12 family (NCBI ptt file)||44, 349|
|CAC3707||CAC3707||Uncharacterized protein, homolog of Bacillus firmus (gi:2654481) (NCBI ptt file)||44, 349|
|CAC3713||CAC3713||Uncharacterized conserved protein, yukE/yfjA B.subtilis family (NCBI ptt file)||44, 349|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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