Organism : Clostridium acetobutylicum | Module List :
Spore coat protein F (NCBI ptt file)
Functional Annotations (1)
|Spore coat protein||cog/ cog|
Regulation information for CAC0613(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0613
|Spore coat protein||cog/ cog|
Module neighborhood information for CAC0613
|Gene||Common Name||Description||Module membership|
|CAC0133||CAC0133||Hypothetical protein, CF-4 family (NCBI ptt file)||150, 300|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0613||CAC0613||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0614||CAC0614||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0810||hypF||Hydrogenase maturation factor (hypF) (NCBI ptt file)||95, 300|
|CAC0863||CAC0863||Sensory transduction histidine kinase (NCBI ptt file)||39, 300|
|CAC1270||CAC1270||Hypothetical protein (NCBI ptt file)||39, 203|
|CAC1298||CAC1298||Uncharacterized protein, related to B.subtilis spore coat protein COTS (NCBI ptt file)||203, 330|
|CAC1335||CAC1335||Spore coat protein F (COTF) related protein (NCBI ptt file)||136, 203|
|CAC1423||CAC1423||Predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YHDF B.subtilis (NCBI ptt file)||118, 300|
|CAC1508||CAC1508||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1575||CAC1575||Hypothetical protein (NCBI ptt file)||188, 203|
|CAC1839||CAC1839||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1864||CAC1864||Hypothetical protein (NCBI ptt file)||203, 290|
|CAC1985||CAC1985||Hypothetical protein (NCBI ptt file)||279, 300|
|CAC2249||CAC2249||C-terminal domain of asparagine synthase (NCBI ptt file)||114, 300|
|CAC2300||CAC2300||Uncharacterized secreted protein, YunB B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2438||CAC2438||Predicted phosphatase (NCBI ptt file)||174, 300|
|CAC2460||CAC2460||Hypothetical protein (NCBI ptt file)||188, 203|
|CAC2499||CAC2499||Pyruvate ferredoxin oxidoreductase (NCBI ptt file)||188, 203|
|CAC2582||CAC2582||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2583||CAC2583||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||150, 300|
|CAC2595||CAC2595||Hypothetical protein (NCBI ptt file)||188, 203|
|CAC2600||CAC2600||Predicted membrane protein (NCBI ptt file)||300, 301|
|CAC2615||CAC2615||Uncharacterized conserved protein, CotF B.subtilis family (NCBI ptt file)||135, 203|
|CAC2666||CAC2666||Hypothetical protein (NCBI ptt file)||300, 330|
|CAC2682||CAC2682||Hypothetical protein (NCBI ptt file)||62, 300|
|CAC2683||cotF||Related to spore coat protein F (NCBI ptt file)||62, 300|
|CAC2686||CAC2686||Possible maltodextrin glucosidase (NCBI ptt file)||203, 330|
|CAC2790||CAC2790||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC2793||CAC2793||Transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD) (NCBI ptt file)||81, 203|
|CAC2794||CAC2794||Transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD) (NCBI ptt file)||300, 330|
|CAC2796||CAC2796||MoaA/NirJ family Fe-S oxidoreductase (NCBI ptt file)||188, 300|
|CAC2800||CAC2800||CotJC-like protein (GS80 family) (NCBI ptt file)||188, 203|
|CAC2801||CAC2801||TPR-repeat-containing protein, secreted (NCBI ptt file)||15, 203|
|CAC3002||CAC3002||Uncharacterized consrved protein, YHJR B.subtilis family (NCBI ptt file)||203, 263|
|CAC3015||CAC3015||Glycosyltransferase (NCBI ptt file)||39, 300|
|CAC3081||CAC3081||Spore-cortex-lytic enzyme, SLEB (NCBI ptt file)||203, 290|
|CAC3317||CAC3317||Spore coat protein F (CotF) family protein (NCBI ptt file)||188, 203|
|CAC3318||CAC3318||Hypothetical protein (NCBI ptt file)||45, 203|
|CAC3330||CAC3330||Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)||154, 300|
|CAC3546||CAC3546||Highly conserved protein containing a domain related to cellulase catalitic domain and a thioredoxin domain (NCBI ptt file)||259, 300|
|CAC3550||natB||Na+ ABC transporter, NATB (NCBI ptt file)||78, 203|
|CAC3674||CAC3674||Two CBS domain containing protein (NCBI ptt file)||114, 300|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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